RPS4B/YHR203C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rps4bp domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rps4bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rps4bp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rps4bp
Protein	Motifs in common with Rps4bp	Other motifs in this protein (but not in Rps4bp )
Rps9bp	SMART SM00363: S4 RNA-binding domain Pfam PF01479: S4	TIGRFAMs TIGR01018: rpsD_arch: ribosomal protein S4 SUPERFAMILY SSF55174: Alpha-L RNA-binding motif Gene3D G3DSA:3.10.290.10: no description Pfam PF00163: Ribosomal_S4 PANTHER PTHR11831:SF3: 40S RIBOSOMAL PROTEIN S9 PANTHER PTHR11831: 30S 40S RIBOSOMAL PROTEIN
Hyp2p	Pfam PF00467: KOW	Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A Pfam PF01287: eIF-5a PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF003025: Translation initiation factor eIF-5A
Rpl26bp	Pfam PF00467: KOW	TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER SUPERFAMILY SSF50104: Translation proteins SH3-like domain
Rpl14bp	Pfam PF00467: KOW	Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14 Pfam PF01929: Ribosomal_L14e
Imp3p	Pfam PF01479: S4 SMART SM00363: S4 RNA-binding domain	Pfam PF00163: Ribosomal_S4 Gene3D G3DSA:3.10.290.10: no description SUPERFAMILY SSF55174: Alpha-L RNA-binding motif PANTHER PTHR11831:SF1: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 PANTHER PTHR11831: 30S 40S RIBOSOMAL PROTEIN
Anb1p	Pfam PF00467: KOW	TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A PIR superfamily PIRSF003025: Translation initiation factor eIF-5A PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins Pfam PF01287: eIF-5a
Rps4ap	PIR superfamily PIRSF002116: Ribosomal protein S4a/S4e Pfam PF00900: Ribosomal_S4e Pfam PF08071: RS4NT Pfam PF01479: S4 Pfam PF00467: KOW PANTHER PTHR11581:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11581: 30S/40S RIBOSOMAL PROTEIN S4 ProDom PD002667: RS4_YEAST_P05753; SMART SM00363: S4 RNA-binding domain	none
Rpl14ap	Pfam PF00467: KOW	Pfam PF01929: Ribosomal_L14e Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14
Rpl26ap	Pfam PF00467: KOW	TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER SUPERFAMILY SSF50104: Translation proteins SH3-like domain
Spt5p	Pfam PF00467: KOW	Pfam PF03439: Spt5-NGN Pfam PF11942: Spt5_N PANTHER PTHR11125:SF7: SUBFAMILY NOT NAMED PANTHER PTHR11125: SUPPRESSOR OF TY 5 SMART SM00738: In Spt5p, this domain may confer affinity fo SMART SM00739: KOW (Kyprides, Ouzounis, Woese) motif. SMART SM01104: Spt5 C-terminal nonapeptide repeat binding S SUPERFAMILY SSF50104: Translation proteins SH3-like domain PIR superfamily PIRSF036945: Transcription elongation factor Spt5
Nam9p	Pfam PF01479: S4 SMART SM00363: S4 RNA-binding domain	PANTHER PTHR11831: 30S 40S RIBOSOMAL PROTEIN Gene3D G3DSA:3.10.290.10: no description SUPERFAMILY SSF55174: Alpha-L RNA-binding motif
Rps9ap	SMART SM00363: S4 RNA-binding domain Pfam PF01479: S4	SUPERFAMILY SSF55174: Alpha-L RNA-binding motif TIGRFAMs TIGR01018: rpsD_arch: ribosomal protein S4 Gene3D G3DSA:3.10.290.10: no description PANTHER PTHR11831:SF3: 40S RIBOSOMAL PROTEIN S9 PANTHER PTHR11831: 30S 40S RIBOSOMAL PROTEIN Pfam PF00163: Ribosomal_S4

Unique domains/motifs

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This table lists domains/motifs that are unique to Rps4bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rps4bp domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rps4bp .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rps4bp .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rps4bp .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rps4bp .