RTT107/YHR154W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rtt107p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rtt107p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rtt107p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rtt107p
Protein	Motifs in common with Rtt107p	Other motifs in this protein (but not in Rtt107p )
Rad9p	Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain Gene3D G3DSA:3.40.50.10190: no description SMART SM00292: breast cancer carboxy-terminal domain	Pfam PF08605: Rad9_Rad53_bind
Nop7p	Gene3D G3DSA:3.40.50.10190: no description Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain SMART SM00292: breast cancer carboxy-terminal domain	Pfam PF06732: Pescadillo_N PANTHER PTHR12221:SF6: SUBFAMILY NOT NAMED PANTHER PTHR12221: PESCADILLO - RELATED
Dpb11p	Gene3D G3DSA:3.40.50.10190: no description SMART SM00292: breast cancer carboxy-terminal domain SUPERFAMILY SSF52113: BRCT domain Pfam PF00533: BRCT	PANTHER PTHR13561:SF19: DNA REPLICATION REGULATOR DPB11 PANTHER PTHR13561: DNA REPLICATION REGULATOR DPB11-RELATED
Chs5p	Gene3D G3DSA:3.40.50.10190: no description SMART SM00292: breast cancer carboxy-terminal domain Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain	Gene3D G3DSA:2.60.40.10: no description SMART SM00060: Fibronectin type PANTHER PTHR13561:SF1: SUBUNIT OF DNA POLYMERASE II-RELATED PANTHER PTHR13561: DNA REPLICATION REGULATOR DPB11-RELATED SUPERFAMILY SSF49265: Fibronectin type III
Fcp1p	SMART SM00292: breast cancer carboxy-terminal domain Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain Gene3D G3DSA:3.40.50.10190: no description	TIGRFAMs TIGR02250: FCP1_euk: FCP1-like phosphatase, phosphatase domai SMART SM00577: catalytic domain of ctd-like phosphatases Pfam PF03031: NIF SUPERFAMILY SSF56784: HAD-like Gene3D G3DSA:3.40.50.1000: no description PANTHER PTHR23081: RNA POLYMERASE II CTD PHOSPHATASE
Rap1p	SUPERFAMILY SSF52113: BRCT domain SMART SM00292: breast cancer carboxy-terminal domain Gene3D G3DSA:3.40.50.10190: no description	SUPERFAMILY SSF46689: Homeodomain-like Pfam PF11626: Rap1_C Pfam PF09197: Rap1-DNA-bind Pfam PF00249: Myb_DNA-binding SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Gene3D G3DSA:1.10.10.60: no description
Dnl4p	SUPERFAMILY SSF52113: BRCT domain Pfam PF00533: BRCT SMART SM00292: breast cancer carboxy-terminal domain	SUPERFAMILY SSF56091: DNA ligase/mRNA capping enzyme, catalytic domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:3.30.1490.70: no description Gene3D G3DSA:3.30.470.30: no description Gene3D G3DSA:2.40.50.140: no description Pfam PF01068: DNA_ligase_A_M Pfam PF04675: DNA_ligase_A_N TIGRFAMs TIGR00574: dnl1: DNA ligase I, ATP-dependent (dnl1) PANTHER PTHR10459:SF7: DNA LIGASE IV PANTHER PTHR10459: DNA LIGASE
Rfc1p	SMART SM00292: breast cancer carboxy-terminal domain Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain Gene3D G3DSA:3.40.50.10190: no description	SMART SM00382: ATPases associated with a variety of cellula PANTHER PTHR23389:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23389: CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 Pfam PF08519: RFC1 Pfam PF00004: AAA SUPERFAMILY SSF48019: DNA polymerase III clamp loader subunits, C-terminal domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PIR superfamily PIRSF036578: DNA replication factor C, large subunit Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description Gene3D G3DSA:1.20.272.10: no description
Rev1p	Pfam PF00533: BRCT SUPERFAMILY SSF52113: BRCT domain Gene3D G3DSA:3.40.50.10190: no description SMART SM00292: breast cancer carboxy-terminal domain	Pfam PF00817: IMS Pfam PF11799: IMS_C PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:1.10.150.20: no description Gene3D G3DSA:3.30.1490.100: no description PIR superfamily PIRSF036573: DNA repair protein, Rev1 type

Unique domains/motifs

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This table lists domains/motifs that are unique to Rtt107p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rtt107p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rtt107p
Database source	Accession number	Description
PANTHER	PTHR23196	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN
PANTHER	PTHR23196:SF7	REGULATOR OF TY1 TRANSPOSITION PROTEIN 107
Pfam	PF12738	PTCB-BRCT

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rtt107p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 20

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rtt107p .