RPF1/YHR088W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpf1p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Rpf1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpf1p
Protein	Motifs in common with Rpf1p	Other motifs in this protein (but not in Rpf1p )
Grs1p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	TIGRFAMs TIGR00389: glyS_dimeric: glycine--tRNA ligase SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases PRINTS PR01043: TRNASYNTHGLY Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon PANTHER PTHR10745:SF0: GLYCYL-TRNA SYNTHETASE PANTHER PTHR10745: GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description
Ssf2p	SMART SM00879: no description Pfam PF04427: Brix	PANTHER PTHR12661:SF2: SSF PANTHER PTHR12661: PETER PAN-RELATED
Aim10p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	PRINTS PR01046: TRNASYNTHPRO Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description Pfam PF00587: tRNA-synt_2b PANTHER PTHR11451:SF3: PROLYL-TRNA SYNTHETASE PANTHER PTHR11451: TRNA SYNTHETASE-RELATED SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases TIGRFAMs TIGR00409: proS_fam_II: proline--tRNA ligase
Yhr020wp	SUPERFAMILY SSF52954: Class II aaRS ABD-related	SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases SUPERFAMILY SSF64586: C-terminal domain of ProRS SUPERFAMILY SSF55826: YbaK/ProRS associated domain Gene3D G3DSA:3.90.960.10: no description Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description Gene3D G3DSA:3.30.110.30: no description Pfam PF09180: ProRS-C_1 Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon PRINTS PR01046: TRNASYNTHPRO SMART SM00946: Prolyl-tRNA synthetase, C-terminal TIGRFAMs TIGR00408: proS_fam_I: proline--tRNA ligase PANTHER PTHR11451:SF6: PROLYL-TRNA SYNTHETASE PANTHER PTHR11451: TRNA SYNTHETASE-RELATED
Ssf1p	Pfam PF04427: Brix SMART SM00879: no description	PANTHER PTHR12661:SF2: SSF PANTHER PTHR12661: PETER PAN-RELATED
Ths1p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases SUPERFAMILY SSF55186: ThrRS/AlaRS common domain SUPERFAMILY SSF81271: TGS-like SMART SM00863: Threonyl and Alanyl tRNA synthetase second a TIGRFAMs TIGR00418: thrS: threonine--tRNA ligase PRINTS PR01047: TRNASYNTHTHR PANTHER PTHR11451:SF5: THREONYL-TRNA SYNTHETASE PANTHER PTHR11451: TRNA SYNTHETASE-RELATED Gene3D G3DSA:3.10.20.30: no description Gene3D G3DSA:3.30.980.10: no description Gene3D G3DSA:3.30.54.20: no description Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon Pfam PF02824: TGS Pfam PF07973: tRNA_SAD
Mst1p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	TIGRFAMs TIGR00418: thrS: threonine--tRNA ligase PANTHER PTHR11451:SF5: THREONYL-TRNA SYNTHETASE PANTHER PTHR11451: TRNA SYNTHETASE-RELATED Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases PRINTS PR01047: TRNASYNTHTHR
Rpf2p	Pfam PF04427: Brix SMART SM00879: no description	PANTHER PTHR12728:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12728: BRIX DOMAIN CONTAINING PROTEIN
Imp4p	SMART SM00879: no description Gene3D G3DSA:3.40.50.10480: no description Pfam PF04427: Brix PANTHER PTHR22734:SF0: SUBFAMILY NOT NAMED PANTHER PTHR22734: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 SUPERFAMILY SSF52954: Class II aaRS ABD-related	none
Brx1p	SMART SM00879: no description Pfam PF04427: Brix SUPERFAMILY SSF52954: Class II aaRS ABD-related	PANTHER PTHR13634: RIBOSOME BIOGENESIS PROTEIN BRIX
Nab3p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description Gene3D G3DSA:3.40.50.800: no description PANTHER PTHR13968:SF15: AFL070CP PANTHER PTHR13968: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Pfam PF00076: RRM_1
Hts1p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description PIR superfamily PIRSF001549: Histidyl-tRNA synthetase PANTHER PTHR11476: HISTIDYL-TRNA SYNTHETASE Pfam PF13393: tRNA-synt_His Pfam PF03129: HGTP_anticodon SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases TIGRFAMs TIGR00442: hisS: histidine--tRNA ligase
Grs2p	SUPERFAMILY SSF52954: Class II aaRS ABD-related	TIGRFAMs TIGR00389: glyS_dimeric: glycine--tRNA ligase Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases PRINTS PR01043: TRNASYNTHGLY PANTHER PTHR10745:SF0: GLYCYL-TRNA SYNTHETASE PANTHER PTHR10745: GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Rpf1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpf1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rpf1p .

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpf1p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpf1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rpf1p .