HMF1/YER057C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Hmf1p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Hmf1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hmf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Hmf1p
Protein	Motifs in common with Hmf1p	Other motifs in this protein (but not in Hmf1p )
Mmf1p	Pfam PF01042: Ribonuc_L-PSP PANTHER PTHR11803: TRANSLATION INITIATION INHIBITOR Gene3D G3DSA:3.30.1330.40: no description SUPERFAMILY SSF55298: YjgF-like TIGRFAMs TIGR00004: TIGR00004: reactive intermediate/imine deaminase	none
Dph6p	SUPERFAMILY SSF55298: YjgF-like Gene3D G3DSA:3.30.1330.40: no description Pfam PF01042: Ribonuc_L-PSP	SUPERFAMILY SSF52402: Adenine nucleotide alpha hydrolases-like Gene3D G3DSA:3.40.50.620: no description Gene3D G3DSA:3.90.1490.10: no description Pfam PF01902: ATP_bind_4 PANTHER PTHR12196: DOMAIN OF UNKNOWN FUNCTION 71 (DUF71)-CONTAINING PROTEIN TIGRFAMs TIGR00290: MJ0570_dom: MJ0570-related uncharacterized domain

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Hmf1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hmf1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Hmf1p .

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Hmf1p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Hmf1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Hmf1p .