BIM1/YER016W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Bim1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Bim1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bim1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Bim1p
Protein	Motifs in common with Bim1p	Other motifs in this protein (but not in Bim1p )
Sac6p	SUPERFAMILY SSF47576: Calponin-homology domain, CH-domain Pfam PF00307: CH Gene3D G3DSA:1.10.418.10: no description	SUPERFAMILY SSF47473: EF-hand PANTHER PTHR19961:SF13: SUBFAMILY NOT NAMED PANTHER PTHR19961: FIMBRIN/PLASTIN SMART SM00033: Calponin homology domain Gene3D G3DSA:1.10.238.10: no description
Scp1p	Pfam PF00307: CH SUPERFAMILY SSF47576: Calponin-homology domain, CH-domain Gene3D G3DSA:1.10.418.10: no description	PANTHER PTHR18959:SF1: GB DEF: S.CEREVISIAE CHROMOSOME XV READING FRAME ORF YOR367W PANTHER PTHR18959: CALPONIN/TRANSGELIN SMART SM00033: Calponin homology domain PRINTS PR00888: SM22CALPONIN
Iqg1p	Gene3D G3DSA:1.10.418.10: no description SUPERFAMILY SSF47576: Calponin-homology domain, CH-domain Pfam PF00307: CH	Gene3D G3DSA:1.10.506.10: no description PANTHER PTHR14149:SF4: RAS GTP-ASE ACTIVATING PROTEIN WITH IQ MOTIF PANTHER PTHR14149: RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF SUPERFAMILY SSF48350: GTPase activation domain, GAP Pfam PF03836: RasGAP_C Pfam PF00616: RasGAP Pfam PF00612: IQ SMART SM00033: Calponin homology domain

Unique domains/motifs

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This table lists domains/motifs that are unique to Bim1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bim1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Bim1p
Database source	Accession number	Description
PANTHER	PTHR10623	MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
PANTHER	PTHR10623:SF6	MICROTUBULE-ASSOCIATED PROTEIN EB1 (MICROTUBULE PLUS-END BINDING PROTEIN)
Pfam	PF03271	EB1
SUPERFAMILY	SSF140612	EB1 dimerisation domain-like

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Bim1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Bim1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Bim1p .