GCN4/YEL009C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Gcn4p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Gcn4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Gcn4p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Gcn4p
Protein	Motifs in common with Gcn4p	Other motifs in this protein (but not in Gcn4p )
Yap6p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description
Cad1p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	SUPERFAMILY SSF111430: YAP1 redox domain Gene3D G3DSA:1.20.5.170: no description Gene3D G3DSA:1.10.238.100: no description Pfam PF08601: PAP1
Aca1p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description PANTHER PTHR19304:SF5: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN PANTHER PTHR19304: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
Yap3p	SMART SM00338: basic region leucin zipper Pfam PF00170: bZIP_1	Gene3D G3DSA:1.20.5.170: no description
Cst6p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description PANTHER PTHR19304:SF5: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN PANTHER PTHR19304: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
Met28p	SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description Pfam PF07716: bZIP_2
Yap5p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description
Yap1p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description Gene3D G3DSA:1.10.238.100: no description SUPERFAMILY SSF111430: YAP1 redox domain Pfam PF08601: PAP1
Met4p	SMART SM00338: BRLZ	Gene3D G3DSA:1.20.5.170: G3DSA:1.20.5.170
Sko1p	SMART SM00338: basic region leucin zipper Pfam PF00170: bZIP_1	Pfam PF11785: Aft1_OSA PANTHER PTHR19304:SF5: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN PANTHER PTHR19304: CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN Gene3D G3DSA:1.20.5.170: no description
Yap7p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Pfam PF10297: Hap4_Hap_bind Gene3D G3DSA:1.20.5.170: no description
Cin5p	Pfam PF00170: bZIP_1 SMART SM00338: basic region leucin zipper	Gene3D G3DSA:1.20.5.170: no description
Arr1p	Pfam PF00170: bZIP_1	Gene3D G3DSA:1.20.5.170: no description Gene3D G3DSA:1.10.238.100: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Gcn4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Gcn4p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Gcn4p
Database source	Accession number	Description
Gene3D	G3DSA:1.20.5.1070	no description
PANTHER	PTHR11462	JUN TRANSCRIPTION FACTOR-RELATED

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Gcn4p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Gcn4p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Gcn4p .