GIM4/YEL003W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Gim4p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Gim4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Gim4p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Gim4p
Protein	Motifs in common with Gim4p	Other motifs in this protein (but not in Gim4p )
Zip1p	SUPERFAMILY SSF46579: Prefoldin	none
Spc110p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR18937:SF67: PROTEIN NUF1 PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Bud27p	Gene3D G3DSA:1.10.287.370: no description SUPERFAMILY SSF46579: Prefoldin	Pfam PF02996: Prefoldin Pfam PF12927: DUF3835
Pac10p	Gene3D G3DSA:1.10.287.370: no description SUPERFAMILY SSF46579: Prefoldin	PIR superfamily PIRSF016396: Prefoldin, subunit 3 PANTHER PTHR12409: PREFOLDIN SUBUNIT 3 Pfam PF02996: Prefoldin
Myo1p	SUPERFAMILY SSF46579: Prefoldin	Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:4.10.270.10: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PRINTS PR00193: MYOSINHEAVY Pfam PF00063: Myosin_head PANTHER PTHR13140:SF23: MYOSIN HEAVY CHAIN, NONMUSCLE OR SMOOTH MUSCLE PANTHER PTHR13140: MYOSIN ProDom PD936484: Q806D4_9VIRU_Q806D4; SMART SM00242: Myosin. Large ATPases.
Tid3p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF03801: Ndc80_HEC PANTHER PTHR10643:SF0: KINETOCHORE PROTEIN NDC80 PANTHER PTHR10643: KINETOCHORE PROTEIN NDC80
Pfd1p	SUPERFAMILY SSF46579: Prefoldin Pfam PF01920: Prefoldin_2 Gene3D G3DSA:1.10.287.370: no description	PANTHER PTHR20903: PREFOLDIN SUBUNIT 1-RELATED
Mlp1p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR32483:SF1: SUBFAMILY NOT NAMED PANTHER PTHR32483: FAMILY NOT NAMED Pfam PF07926: TPR_MLP1_2 SUPERFAMILY SSF46966: Spectrin repeat
Smc4p	SUPERFAMILY SSF46579: Prefoldin	SMART SM00968: SMC proteins Flexible Hinge Domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF75553: Smc hinge domain Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR18937:SF13: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC4 PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER Pfam PF02463: SMC_N Pfam PF06470: SMC_hinge
Yke2p	SUPERFAMILY SSF46579: Prefoldin Pfam PF01920: Prefoldin_2 Gene3D G3DSA:1.10.287.370: no description	PANTHER PTHR21431:SF0: SUBFAMILY NOT NAMED PANTHER PTHR21431: PREFOLDIN SUBUNIT 6
Imh1p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR18937:SF69: SUBFAMILY NOT NAMED PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER Pfam PF01465: GRIP SMART SM00755: golgin-97, RanBP2alpha,Imh1p and p230/golgin
Gim5p	SUPERFAMILY SSF46579: Prefoldin Gene3D G3DSA:1.10.287.370: no description	PANTHER PTHR12674:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12674: PREFOLDIN SUBUNIT 5 TIGRFAMs TIGR00293: TIGR00293: prefoldin, alpha subunit Pfam PF02996: Prefoldin
Gim3p	Pfam PF01920: Prefoldin_2 Gene3D G3DSA:1.10.287.370: no description SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR21100:SF7: GB DEF: PREFOLDIN SUBUNIT 4 PANTHER PTHR21100: FAMILY NOT NAMED PIR superfamily PIRSF016477: Prefoldin, subunit 4
Rad50p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR18867:SF11: RAD50 PANTHER PTHR18867: RAD50 Gene3D G3DSA:3.40.50.300: no description TIGRFAMs TIGR00606: rad50: rad50 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF13476: AAA_23 Pfam PF04423: Rad50_zn_hook Pfam PF13558: SbcCD_C
Slk19p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF12709: Kinetocho_Slk19

Unique domains/motifs

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This table lists domains/motifs that are unique to Gim4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Gim4p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Gim4p
Database source	Accession number	Description
PANTHER	PTHR13303	PREFOLDIN SUBUNIT 2

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Gim4p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Gim4p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Gim4p .