SRB8/YCR081W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Srb8p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Srb8p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Srb8p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Srb8p
Protein	Motifs in common with Srb8p	Other motifs in this protein (but not in Srb8p )
Snt1p	PANTHER PTHR22795: SUPPRESSOR OF RNA POLYMERASE B SRB8-RELATED	SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF00249: Myb_DNA-binding Pfam PF03990: DUF348 SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description PANTHER PTHR22795:SF11: UNCHARACTERIZED

Unique domains/motifs

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This table lists domains/motifs that are unique to Srb8p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Srb8p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Srb8p
Database source	Accession number	Description
PANTHER	PTHR22795:SF10	SUPPRESSOR OF RNA POLYMERASE B SRB8
Pfam	PF09497	Med12

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Srb8p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Srb8p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Srb8p .