BIK1/YCL029C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Bik1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Bik1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bik1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Bik1p
Protein	Motifs in common with Bik1p	Other motifs in this protein (but not in Bik1p )
Pac2p	Pfam PF01302: CAP_GLY SUPERFAMILY SSF74924: Cap-Gly domain SMART SM01052: no description Gene3D G3DSA:2.30.30.190: no description	PANTHER PTHR15140:SF6: SUBFAMILY NOT NAMED PANTHER PTHR15140: TUBULIN-SPECIFIC CHAPERONE E Pfam PF13516: LRR_6 Pfam PF00560: LRR_1 SUPERFAMILY SSF52047: RNI-like SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.80.10.10: no description
Alf1p	PANTHER PTHR18916: DYNACTIN 1-RELATED MICROTUBULE-BINDING SUPERFAMILY SSF74924: Cap-Gly domain Gene3D G3DSA:2.30.30.190: no description Pfam PF01302: CAP_GLY SMART SM01052: no description	PANTHER PTHR18916:SF6: TUBULIN-SPECIFIC CHAPERONE B (TUBULIN FOLDING COFACTOR B) SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description
Nip100p	Gene3D G3DSA:2.30.30.190: no description SMART SM01052: no description Pfam PF01302: CAP_GLY SUPERFAMILY SSF74924: Cap-Gly domain PANTHER PTHR18916: DYNACTIN 1-RELATED MICROTUBULE-BINDING	PANTHER PTHR18916:SF7: GB DEF: NIP80 PROTEIN (NIP100 PROTEIN)

Unique domains/motifs

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This table lists domains/motifs that are unique to Bik1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bik1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Bik1p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Bik1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Bik1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Bik1p .