DPB3/YBR278W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Dpb3p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Dpb3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Dpb3p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Dpb3p
Protein	Motifs in common with Dpb3p	Other motifs in this protein (but not in Dpb3p )
Htb2p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	Pfam PF00125: Histone PANTHER PTHR23428: HISTONE H2B PRINTS PR00621: HISTONEH2B SMART SM00427: Histone H2B
Hta2p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	SMART SM00414: Histone 2A PANTHER PTHR23430: HISTONE H2A PRINTS PR00620: HISTONEH2A Pfam PF00125: Histone
Hap3p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	Pfam PF00808: CBFD_NFYB_HMF PANTHER PTHR11064:SF9: CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A PANTHER PTHR11064: CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED PRINTS PR00615: CCAATSUBUNTA
Hhf1p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR10484: HISTONE H4 SMART SM00417: Histone H4 PRINTS PR00623: HISTONEH4 Pfam PF00125: Histone
Hht1p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	SMART SM00428: Histone H3 PRINTS PR00622: HISTONEH3 Pfam PF00125: Histone PANTHER PTHR11426: HISTONE H3
Dpb4p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	PANTHER PTHR11064:SF7: UNCHARACTERIZED PANTHER PTHR11064: CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED
Taf12p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	ProDom PD012998: TAF12_YEAST_Q03761; Pfam PF03847: TFIID_20kDa PANTHER PTHR12264:SF2: GB DEF: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 (TBP-ASSOCIATED FACTOR 12) (TBP PANTHER PTHR12264: FAMILY NOT NAMED
Htb1p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	SMART SM00427: Histone H2B PRINTS PR00621: HISTONEH2B Pfam PF00125: Histone PANTHER PTHR23428: HISTONE H2B
Hta1p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	PRINTS PR00620: HISTONEH2A PANTHER PTHR23430: HISTONE H2A Pfam PF00125: Histone SMART SM00414: Histone 2A
Spt3p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR11380:SF3: TRANSCRIPTION INITIATION FACTOR SUPT3 PANTHER PTHR11380: TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED Pfam PF02269: TFIID-18kDa
Ncb2p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR11064:SF8: TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN (DR1) PANTHER PTHR11064: CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED Pfam PF00808: CBFD_NFYB_HMF
Bur6p	PANTHER PTHR10252: HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	PANTHER PTHR10252:SF5: DR1-ASSOCIATED COREPRESSOR Pfam PF00808: CBFD_NFYB_HMF
Taf6p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR10221: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 Pfam PF02969: TAF Pfam PF07571: DUF1546 SMART SM00803: TATA box binding protein associated factor
Dls1p	Gene3D G3DSA:1.10.20.10: no description PANTHER PTHR10252:SF4: DNA POLYMERASE EPSILON SUBUNIT C-RELATED PANTHER PTHR10252: HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED SUPERFAMILY SSF47113: Histone-fold	Pfam PF00808: CBFD_NFYB_HMF
Cse4p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	Pfam PF00125: Histone PANTHER PTHR11426: HISTONE H3 SMART SM00428: Histone H3 PRINTS PR00622: HISTONEH3
Taf11p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR13218:SF1: GB DEF: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11 (TBP-ASSOCIATED FACTOR 11) (TBP PANTHER PTHR13218: FAMILY NOT NAMED Pfam PF04719: TAFII28
Taf13p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	Pfam PF02269: TFIID-18kDa PANTHER PTHR11380:SF4: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT PANTHER PTHR11380: TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
Taf9p	Gene3D G3DSA:1.10.20.10: no description SUPERFAMILY SSF47113: Histone-fold	PANTHER PTHR12075: TRANSCRIPTION INITIATION FACTOR TFIID COMPONENT Pfam PF02291: TFIID-31kDa
Hhf2p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	Pfam PF00125: Histone PRINTS PR00623: HISTONEH4 PANTHER PTHR10484: HISTONE H4 SMART SM00417: Histone H4
Hht2p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	SMART SM00428: Histone H3 Pfam PF00125: Histone PRINTS PR00622: HISTONEH3 PANTHER PTHR11426: HISTONE H3
Htz1p	SUPERFAMILY SSF47113: Histone-fold Gene3D G3DSA:1.10.20.10: no description	Pfam PF00125: Histone SMART SM00414: Histone 2A PANTHER PTHR23430: HISTONE H2A PRINTS PR00620: HISTONEH2A
Hap5p	SUPERFAMILY SSF47113: Histone-fold PANTHER PTHR10252: HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Gene3D G3DSA:1.10.20.10: no description	PANTHER PTHR10252:SF8: TRANSCRIPTIONAL ACTIVATOR HAP5 Pfam PF00808: CBFD_NFYB_HMF

Unique domains/motifs

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This table lists domains/motifs that are unique to Dpb3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Dpb3p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Dpb3p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Dpb3p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Dpb3p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Dpb3p .