RIB5/YBR256C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rib5p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rib5p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rib5p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rib5p
Protein	Motifs in common with Rib5p	Other motifs in this protein (but not in Rib5p )
Atp1p	Gene3D G3DSA:2.40.30.20: no description	Pfam PF00006: ATP-synt_ab Pfam PF00306: ATP-synt_ab_C Pfam PF02874: ATP-synt_ab_N PANTHER PTHR15184:SF3: ATP SYNTHASE ALPHA SUBUNIT MITOCHONDRIAL PANTHER PTHR15184: ATP SYNTHASE SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47917: C-terminal domain of alpha and beta subunits of F1 ATP synthase SUPERFAMILY SSF50615: N-terminal domain of alpha and beta subunits of F1 ATP synthase TIGRFAMs TIGR00962: atpA: ATP synthase F1, alpha subunit Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.20.150.20: no description
Met10p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Gene3D G3DSA:3.40.50.920: no description Gene3D G3DSA:3.40.920.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF53323: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III SUPERFAMILY SSF52922: TK C-terminal domain-like PRINTS PR00371: FPNCR Pfam PF00667: FAD_binding_1 Pfam PF00175: NAD_binding_1 PANTHER PTHR19384:SF16: SULFITE REDUCTASE PANTHER PTHR19384: FLAVODOXIN-RELATED
Yhb1p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Gene3D G3DSA:1.10.490.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00970: FAD_binding_6 Pfam PF00042: Globin Pfam PF00175: NAD_binding_1 SUPERFAMILY SSF46458: Globin-like SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain PANTHER PTHR22924: LEGHEMOGLOBIN-RELATED
Ncp1p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	PANTHER PTHR19384: FLAVODOXIN-RELATED SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF52218: Flavoproteins Gene3D G3DSA:3.40.50.360: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00667: FAD_binding_1 Pfam PF00258: Flavodoxin_1 Pfam PF00175: NAD_binding_1 PRINTS PR00371: FPNCR PRINTS PR00369: FLAVODOXIN
Cbr1p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	PANTHER PTHR19370:SF6: GB DEF: PUTATIVE NADH-CYTOCHROME B5 REDUCTASE (EC 1.6.2.2) (P35) PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR Pfam PF00175: NAD_binding_1 Pfam PF00970: FAD_binding_6 SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain
Mcr1p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00175: NAD_binding_1 Pfam PF00970: FAD_binding_6 SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain PANTHER PTHR19370:SF8: SUBFAMILY NOT NAMED PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR
Fre2p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain PANTHER PTHR32361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32361: FAMILY NOT NAMED
Aim33p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Pfam PF00970: FAD_binding_6 Pfam PF00175: NAD_binding_1 Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR PANTHER PTHR19370:SF12: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain
Pga3p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR Pfam PF00970: FAD_binding_6 Pfam PF00175: NAD_binding_1 Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR19370:SF12: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE
Fre4p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain PANTHER PTHR32361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32361: FAMILY NOT NAMED Gene3D G3DSA:3.40.50.80: no description
Fre7p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR11972:SF14: SUBFAMILY NOT NAMED PANTHER PTHR11972: NADPH OXIDASE Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct
Cyc2p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	Pfam PF00970: FAD_binding_6 Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description
Fre3p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR32361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32361: FAMILY NOT NAMED
Fre5p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR11972:SF15: SUBFAMILY NOT NAMED PANTHER PTHR11972: NADPH OXIDASE Pfam PF08022: FAD_binding_8 Pfam PF08030: NAD_binding_6 Pfam PF01794: Ferric_reduct
Tah18p	SUPERFAMILY SSF63380: Riboflavin synthase domain-like	PRINTS PR00371: FPNCR PRINTS PR00369: FLAVODOXIN SUPERFAMILY SSF52218: Flavoproteins SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain Gene3D G3DSA:3.40.50.360: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00667: FAD_binding_1 Pfam PF00258: Flavodoxin_1 Pfam PF00175: NAD_binding_1 PANTHER PTHR19384:SF9: NADPH FAD OXIDOREDUCTASE PANTHER PTHR19384: FLAVODOXIN-RELATED

Unique domains/motifs

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This table lists domains/motifs that are unique to Rib5p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rib5p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rib5p
Database source	Accession number	Description
PIR superfamily	PIRSF000498	Riboflavin synthase, alpha subunit
PANTHER	PTHR21098	RIBOFLAVIN SYNTHASE ALPHA CHAIN
Pfam	PF00677	Lum_binding
TIGRFAMs	TIGR00187	ribE: riboflavin synthase, alpha subunit

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rib5p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rib5p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rib5p .