BEM1/YBR200W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Bem1p domain/motif information see the external links section.

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Shared domains/motifs
Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)


This table lists proteins that share domains/motifs in common with those found in Bem1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bem1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Bem1p
Protein Motifs in common with Bem1p Other motifs in this protein (but not in Bem1p )
Cdc24p SUPERFAMILY SSF54277: CAD & PB1 domains
Gene3D G3DSA:3.10.20.240: no description
Pfam PF00564: PB1
SMART SM00666: PB1 domain
 SUPERFAMILY SSF48065: DBL homology domain (DH-domain)
SUPERFAMILY SSF50729: PH domain-like
Gene3D G3DSA:1.20.900.10: no description
Gene3D G3DSA:2.30.29.30: no description
PANTHER PTHR22826:SF51: STILL LIFE PROTEIN, SIF (T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN) (TIAM PROTEIN)
PANTHER PTHR22826: RHO GUANINE EXCHANGE FACTOR-RELATED
Pfam PF00621: RhoGEF
Pfam PF06395: CDC24
SMART SM00033: Calponin homology domain
SMART SM00325: Guanine nucleotide exchange factor for Rho/R
SMART SM00233: Pleckstrin homology domain.
Bud14p Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
 none
Sla1p SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
 ProDom PD936484: Q806D4_9VIRU_Q806D4;
PRINTS PR00452: SH3DOMAIN
PANTHER PTHR11216:SF6: INTERSECTIN 1-RELATED
PANTHER PTHR11216: EH DOMAIN
Pfam PF03983: SHD1
Boi1p SUPERFAMILY SSF50044: SH3-domain
Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
 SUPERFAMILY SSF50729: PH domain-like
SUPERFAMILY SSF47769: SAM/Pointed domain
Pfam PF00169: PH
Pfam PF07647: SAM_2
Gene3D G3DSA:1.10.150.50: no description
Gene3D G3DSA:2.30.29.30: no description
PANTHER PTHR10321:SF20: PROTEIN BOB1
PANTHER PTHR10321: BRIDGING INTEGRATOR
SMART SM00454: Sterile alpha motif.
SMART SM00233: Pleckstrin homology domain.
Fus1p SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
 none
Abp1p Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
Pfam PF00018: SH3_1
 PRINTS PR00452: SH3DOMAIN
PRINTS PR00499: P67PHOX
Gene3D G3DSA:3.40.20.10: no description
SUPERFAMILY SSF55753: Actin depolymerizing proteins
SMART SM00102: Actin depolymerisation factor/cofilin -like
PANTHER PTHR10829:SF2: DREBRIN-RELATED
PANTHER PTHR10829: CORTACTIN AND DREBRIN
Pfam PF00241: Cofilin_ADF
Atg20p Gene3D G3DSA:3.30.1520.10: no description
SUPERFAMILY SSF64268: PX domain
SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
 PANTHER PTHR10555:SF74: AUTOPHAGY-RELATED PROTEIN 20
PANTHER PTHR10555: SORTING NEXIN
Cyk3p Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
 SMART SM00460: Transglutaminase/protease-like homologues
PANTHER PTHR10661:SF52: SH3 DOMAIN-CONTAINING PROTEIN
PANTHER PTHR10661: SH3 DOMAIN-CONTAINING PROTEIN
SUPERFAMILY SSF54001: Cysteine proteinases
Nbp2p Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
 PANTHER PTHR10661:SF52: SH3 DOMAIN-CONTAINING PROTEIN
PANTHER PTHR10661: SH3 DOMAIN-CONTAINING PROTEIN
Rvs167p Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
Pfam PF00018: SH3_1
 PRINTS PR00452: SH3DOMAIN
Gene3D G3DSA:1.20.1270.60: no description
PANTHER PTHR10321:SF4: AMPHIPHYSIN-RELATED
PANTHER PTHR10321: BRIDGING INTEGRATOR
SUPERFAMILY SSF103657: BAR/IMD domain-like
SMART SM00721: no description
Pfam PF03114: BAR
Snx41p Pfam PF00787: PX
Gene3D G3DSA:3.30.1520.10: no description
SUPERFAMILY SSF64268: PX domain
SMART SM00312: PhoX homologous domain, present in p47phox a
 PANTHER PTHR10555:SF75: SORTING NEXIN-41
PANTHER PTHR10555: SORTING NEXIN
Boi2p Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
 Gene3D G3DSA:1.10.150.50: no description
Gene3D G3DSA:2.30.29.30: no description
Pfam PF00169: PH
Pfam PF07647: SAM_2
SUPERFAMILY SSF50729: PH domain-like
SUPERFAMILY SSF47769: SAM/Pointed domain
PANTHER PTHR10321:SF21: PROTEIN BOI2
PANTHER PTHR10321: BRIDGING INTEGRATOR
SMART SM00454: Sterile alpha motif.
SMART SM00233: Pleckstrin homology domain.
Sho1p Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
 PANTHER PTHR22820:SF8: C-FYN
PANTHER PTHR22820: SH2 DOMAIN ADAPTOR PROTEIN
PRINTS PR00452: SH3DOMAIN
Lsb3p Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
Pfam PF00018: SH3_1
 PANTHER PTHR15629: SH3YL1 PROTEIN
PRINTS PR00452: SH3DOMAIN
Pfam PF04366: DUF500
Vam7p SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
Gene3D G3DSA:3.30.1520.10: no description
SUPERFAMILY SSF64268: PX domain
 SMART SM00397: Helical region found in SNAREs
Pfam PF05739: SNARE
PANTHER PTHR12380:SF1: GB DEF: VACUOLAR MORPHOGENESIS PROTEIN VAM7
PANTHER PTHR12380: SYNTAXIN
Gene3D G3DSA:1.20.5.110: no description
Lsb1p Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
 PANTHER PTHR10661:SF52: SH3 DOMAIN-CONTAINING PROTEIN
PANTHER PTHR10661: SH3 DOMAIN-CONTAINING PROTEIN
PRINTS PR00452: SH3DOMAIN
PRINTS PR00499: P67PHOX
Hse1p Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
 Pfam PF00790: VHS
PANTHER PTHR13856:SF44: SIGNAL TRANSDUCING ADAPTER MOLECULE (STAM)
PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY
Gene3D G3DSA:1.25.40.90: no description
SUPERFAMILY SSF48464: ENTH/VHS domain
SMART SM00288: Domain present in VPS-27, Hrs and STAM
SMART SM00726: Ubiquitin-interacting motif.
PRINTS PR00452: SH3DOMAIN
PRINTS PR00499: P67PHOX
Ysc84p Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
Pfam PF00018: SH3_1
 PRINTS PR00452: SH3DOMAIN
PRINTS PR01887: SPECTRNALPHA
PANTHER PTHR15629: SH3YL1 PROTEIN
Pfam PF04366: DUF500
Ypt35p Gene3D G3DSA:3.30.1520.10: no description
SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
SUPERFAMILY SSF64268: PX domain
 PANTHER PTHR10555:SF48: SORTING NEXIN-3
PANTHER PTHR10555: SORTING NEXIN
Bzz1p Pfam PF00018: SH3_1
SUPERFAMILY SSF50044: SH3-domain
Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
 PANTHER PTHR12602:SF1: FORMIN BINDING PROTEIN-RELATED, FUNGI
PANTHER PTHR12602: FORMIN BINDING PROTEIN AND RELATED PROTEINS
Pfam PF00611: FCH
SMART SM00055: Fes/CIP4 homology domain
Bbc1p Pfam PF00018: SH3_1
SUPERFAMILY SSF50044: SH3-domain
Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
 none
Snx4p SUPERFAMILY SSF64268: PX domain
Gene3D G3DSA:3.30.1520.10: no description
Pfam PF00787: PX
SMART SM00312: PhoX homologous domain, present in p47phox a
 PANTHER PTHR10555:SF24: SORTING NEXIN 4
PANTHER PTHR10555: SORTING NEXIN
SUPERFAMILY SSF103657: BAR/IMD domain-like
Myo3p Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
 PRINTS PR00193: MYOSINHEAVY
Pfam PF00063: Myosin_head
Pfam PF06017: Myosin_TH1
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR13140:SF31: MYOSIN I
PANTHER PTHR13140: MYOSIN
SMART SM00242: Myosin. Large ATPases.
Spo14p SMART SM00312: PhoX homologous domain, present in p47phox a
 Pfam PF00614: PLDc
Pfam PF13091: PLDc_2
Gene3D G3DSA:3.30.870.10: no description
PIR superfamily PIRSF009376: Phospholipase D, eukaryotic type
PANTHER PTHR18896:SF4: PHOPHOLIPASE D
PANTHER PTHR18896: PHOSPHOLIPASE D
SMART SM00233: Pleckstrin homology domain.
SMART SM00155: Phospholipase D. Active site motifs.
SUPERFAMILY SSF56024: Phospholipase D/nuclease
Ykr078wp Gene3D G3DSA:3.30.1520.10: no description
SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
 Pfam PF09325: Vps5
PANTHER PTHR10555:SF3: GB DEF: HYPOTHETICAL 68.3 KDA PROTEIN IN SIS2-MTD1 INTERGENIC REGION
PANTHER PTHR10555: SORTING NEXIN
Yll017wp SMART SM00326: Src homology
SUPERFAMILY SSF50044: SH3-domain
Pfam PF00018: SH3_1
Gene3D G3DSA:2.30.30.40: no description
 none
Pex13p Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
SMART SM00326: Src homology
Pfam PF00018: SH3_1
 PRINTS PR00452: SH3DOMAIN
PANTHER PTHR19332:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR19332: PEROXISOMAL MEMBRANE PROTEIN PEX13
Pfam PF04088: Peroxin-13_N
Cdc25p SMART SM00326: Src homology
Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
SUPERFAMILY SSF50044: SH3-domain
 SMART SM00229: Guanine nucleotide exchange factor for Ras-l
SMART SM00147: Guanine nucleotide exchange factor for Ras-l
Gene3D G3DSA:1.20.870.10: no description
Gene3D G3DSA:1.10.840.10: no description
Pfam PF00617: RasGEF
Pfam PF00618: RasGEF_N
SUPERFAMILY SSF48366: Ras GEF
PANTHER PTHR23113:SF41: RAS GTP EXCHANGE FACTOR
PANTHER PTHR23113: GUANINE NUCLEOTIDE EXCHANGE FACTOR
Mdm1p Gene3D G3DSA:3.30.1520.10: no description
Pfam PF00787: PX
SUPERFAMILY SSF64268: PX domain
SMART SM00312: PhoX homologous domain, present in p47phox a
 Pfam PF02194: PXA
Pfam PF08628: Nexin_C
PANTHER PTHR22775:SF7: MDM1
PANTHER PTHR22775: SORTING NEXIN
SMART SM00313: Domain associated with PX domains
Mvp1p Gene3D G3DSA:3.30.1520.10: no description
Pfam PF00787: PX
SMART SM00312: PhoX homologous domain, present in p47phox a
SUPERFAMILY SSF64268: PX domain
 PANTHER PTHR10555:SF17: SORTING NEXIN MVP1
PANTHER PTHR10555: SORTING NEXIN
Hof1p SUPERFAMILY SSF50044: SH3-domain
Gene3D G3DSA:2.30.30.40: no description
SMART SM00326: Src homology
 PANTHER PTHR10959:SF3: CYTOKINESIS 2 PROTEIN
PANTHER PTHR10959: PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROTEIN
SMART SM00055: Fes/CIP4 homology domain
Pfam PF00611: FCH
Myo5p SUPERFAMILY SSF50044: SH3-domain
Gene3D G3DSA:2.30.30.40: no description
Pfam PF00018: SH3_1
SMART SM00326: Src homology
 PRINTS PR00193: MYOSINHEAVY
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR13140:SF31: MYOSIN I
PANTHER PTHR13140: MYOSIN
Pfam PF00063: Myosin_head
Pfam PF06017: Myosin_TH1
SMART SM00242: Myosin. Large ATPases.
Vps5p Gene3D G3DSA:3.30.1520.10: no description
SUPERFAMILY SSF64268: PX domain
Pfam PF00787: PX
SMART SM00312: PhoX homologous domain, present in p47phox a
 Pfam PF09325: Vps5
PANTHER PTHR10555:SF26: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 5
PANTHER PTHR10555: SORTING NEXIN
Vps17p SUPERFAMILY SSF64268: PX domain
Pfam PF00787: PX
SMART SM00312: PhoX homologous domain, present in p47phox a
Gene3D G3DSA:3.30.1520.10: no description
 Pfam PF09325: Vps5
PIR superfamily PIRSF011791: Retromer complex, Vps17 subunit
PANTHER PTHR10555:SF46: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 17-RELATED
PANTHER PTHR10555: SORTING NEXIN
Snx3p SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
Gene3D G3DSA:3.30.1520.10: no description
SUPERFAMILY SSF64268: PX domain
 PANTHER PTHR10555:SF48: SORTING NEXIN-3
PANTHER PTHR10555: SORTING NEXIN
Bem3p SMART SM00312: PhoX homologous domain, present in p47phox a
Pfam PF00787: PX
 Gene3D G3DSA:2.30.29.30: no description
Gene3D G3DSA:1.10.555.10: no description
SUPERFAMILY SSF48350: GTPase activation domain, GAP
SUPERFAMILY SSF50729: PH domain-like
SMART SM00233: Pleckstrin homology domain.
SMART SM00324: GTPase-activator protein for Rho-like GTPase
Pfam PF00620: RhoGAP
Pfam PF00169: PH
PANTHER PTHR23178: CHIMERIN-RELATED RHO- GTPASE-ACTIVATING PROTEIN
Ypr097wp SUPERFAMILY SSF64268: PX domain
Gene3D G3DSA:3.30.1520.10: no description
Pfam PF00787: PX
SMART SM00312: PhoX homologous domain, present in p47phox a
 PANTHER PTHR11632:SF2: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
Pfam PF12825: DUF3818
Pfam PF12828: PXB
Pin3p Pfam PF00018: SH3_1
SMART SM00326: Src homology
Gene3D G3DSA:2.30.30.40: no description
SUPERFAMILY SSF50044: SH3-domain
 PRINTS PR00452: SH3DOMAIN
PRINTS PR00499: P67PHOX
PANTHER PTHR10321:SF22: AFR320WP
PANTHER PTHR10321: BRIDGING INTEGRATOR

Unique domains/motifs
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This table lists domains/motifs that are unique to Bem1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bem1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Bem1p
Database source Accession number Description
PANTHER PTHR15706 SH3 MULTIPLE DOMAIN

Transmembrane Domains
Jump to: top | Shared domains | Unique domains | Signal peptide(s)


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Bem1p .

Signal Peptide(s)
Jump to: top | Shared domains | Unique domains | Transmembrane domains


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Bem1p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Bem1p .