SMY2/YBR172C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Smy2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Smy2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Smy2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Smy2p
Protein	Motifs in common with Smy2p	Other motifs in this protein (but not in Smy2p )
Lin1p	Pfam PF02213: GYF SMART SM00444: Contains conserved Gly-Tyr-Phe residues	PANTHER PTHR13138: PROTEIN LIN1
Syh1p	SMART SM00444: Contains conserved Gly-Tyr-Phe residues Pfam PF02213: GYF PANTHER PTHR14445: GRB10 INTERACTING GYF PROTEIN SUPERFAMILY SSF55277: GYF domain Gene3D G3DSA:3.30.1490.40: no description	PANTHER PTHR14445:SF16: UNCHARACTERIZED PROTEIN YPL105C

Unique domains/motifs

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This table lists domains/motifs that are unique to Smy2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Smy2p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Smy2p
Database source	Accession number	Description
PANTHER	PTHR14445:SF15	SUBFAMILY NOT NAMED

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Smy2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Smy2p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Smy2p .