CMD1/YBR109C Domains/Motifs and Signal Peptides 
To directly search external databases for Cmd1p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Cmd1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Cmd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Cmd1p | ||
|---|---|---|
| Protein | Motifs in common with Cmd1p | Other motifs in this protein (but not in Cmd1p ) |
| Gem1p | SUPERFAMILY SSF47473: EF-hand |
PIR superfamily PIRSF037488: Mitochondrial Rho GTPase Pfam PF08477: Miro Pfam PF08356: EF_assoc_2 Pfam PF08355: EF_assoc_1 Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00173: Ras subfamily of RAS small GTPases SMART SM00175: Rab subfamily of small GTPases SMART SM00174: Rho (Ras homology) subfamily of Ras-like sma PANTHER PTHR24072:SF69: SUBFAMILY NOT NAMED PANTHER PTHR24072: FAMILY NOT NAMED PRINTS PR00449: RASTRNSFRMNG |
| Ede1p | SUPERFAMILY SSF47473: EF-hand SMART SM00054: EF-hand, calcium binding motif Gene3D G3DSA:1.10.238.10: no description |
SUPERFAMILY SSF46934: UBA-like SMART SM00027: Eps15 homology domain SMART SM00165: Ubiquitin associated domain Pfam PF12763: efhand_3 Pfam PF00627: UBA PANTHER PTHR11216:SF10: UNCHARACTERIZED PANTHER PTHR11216: EH DOMAIN Gene3D G3DSA:1.10.8.10: no description |
| Sac6p | SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
SUPERFAMILY SSF47576: Calponin-homology domain, CH-domain PANTHER PTHR19961:SF13: SUBFAMILY NOT NAMED PANTHER PTHR19961: FIMBRIN/PLASTIN Pfam PF00307: CH SMART SM00033: Calponin homology domain Gene3D G3DSA:1.10.418.10: no description |
| Frq1p | SMART SM00054: EF-hand, calcium binding motif Gene3D G3DSA:1.10.238.10: no description SUPERFAMILY SSF47473: EF-hand Pfam PF13499: EF_hand_5 |
PRINTS PR00450: RECOVERIN Pfam PF13833: EF_hand_6 PANTHER PTHR23055:SF22: NEURONAL CALCIUM SENSOR 1 PANTHER PTHR23055: CALCIUM BINDING PROTEINS |
| Mlc1p | SUPERFAMILY SSF47473: EF-hand SMART SM00054: EF-hand, calcium binding motif Pfam PF13499: EF_hand_5 Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR23048:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23048: MYOSIN LIGHT CHAIN 1, 3 |
| Pef1p | SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR10183:SF145: CALPAIN SMALL SUBUNIT-RELATED PANTHER PTHR10183: CALPAIN |
| Mdr1p | SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR22957:SF48: GTPASE-ACTIVATING PROTEIN GYP2 PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN Pfam PF00566: RabGAP-TBC Pfam PF02893: GRAM Pfam PF13405: EF_hand_4 SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p SMART SM00568: domain in glucosyltransferases, myotubularin SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable Gene3D G3DSA:1.10.8.270: no description |
| Pan1p | SMART SM00054: EF-hand, calcium binding motif SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR11216:SF35: INTERSECTIN-RELATED PANTHER PTHR11216: EH DOMAIN SMART SM00027: Eps15 homology domain Pfam PF12763: efhand_3 Pfam PF08226: DUF1720 |
| Tax4p | Gene3D G3DSA:1.10.238.10: no description SUPERFAMILY SSF47473: EF-hand |
PANTHER PTHR11216:SF39: PREDICTED: SARCALUMENIN PANTHER PTHR11216: EH DOMAIN SMART SM00027: Eps15 homology domain |
| Cnb1p | Pfam PF13499: EF_hand_5 SUPERFAMILY SSF47473: EF-hand SMART SM00054: EF-hand, calcium binding motif Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR23056: CALCINEURIN B PRINTS PR01697: PARVALBUMIN |
| Irs4p | Gene3D G3DSA:1.10.238.10: no description SUPERFAMILY SSF47473: EF-hand |
PANTHER PTHR11216:SF38: INTERSECTIN-2 (SH3 DOMAIN-CONTAINING PROTEIN 1B)(SH3P18)(SH3P18-LIKE WASP-ASSOCI PANTHER PTHR11216: EH DOMAIN SMART SM00027: Eps15 homology domain |
| Ssp120p | Pfam PF13499: EF_hand_5 SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
none |
| Sal1p | SUPERFAMILY SSF47473: EF-hand Pfam PF13499: EF_hand_5 Gene3D G3DSA:1.10.238.10: no description |
PRINTS PR00926: MITOCARRIER SUPERFAMILY SSF103506: Mitochondrial carrier Pfam PF00153: Mito_carr Pfam PF13202: EF_hand_3 PANTHER PTHR24089:SF57: SUBFAMILY NOT NAMED PANTHER PTHR24089: FAMILY NOT NAMED Gene3D G3DSA:1.50.40.10: no description |
| End3p | Gene3D G3DSA:1.10.238.10: no description SUPERFAMILY SSF47473: EF-hand |
SMART SM00027: Eps15 homology domain Pfam PF12763: efhand_3 Pfam PF12761: End3 PANTHER PTHR11216:SF9: END3 PANTHER PTHR11216: EH DOMAIN |
| Cdc31p | Pfam PF13499: EF_hand_5 SMART SM00054: EF-hand, calcium binding motif SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
PANTHER PTHR10891:SF175: CELL DIVISION CONTROL PROTEIN 31 PANTHER PTHR10891: EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
| Plc1p | SUPERFAMILY SSF47473: EF-hand Gene3D G3DSA:1.10.238.10: no description |
Pfam PF00388: PI-PLC-X Pfam PF00387: PI-PLC-Y SUPERFAMILY SSF51695: PLC-like phosphodiesterases SUPERFAMILY SSF49562: C2 domain (Calcium/lipid-binding domain, CaLB) SUPERFAMILY SSF50729: PH domain-like PRINTS PR00390: PHPHLIPASEC Gene3D G3DSA:2.30.29.30: no description Gene3D G3DSA:3.20.20.190: no description Gene3D G3DSA:2.60.40.150: no description SMART SM00148: Phospholipase C, catalytic domain (part); do SMART SM00149: Phospholipase C, catalytic domain (part); do SMART SM00239: Protein kinase C conserved region PANTHER PTHR10336:SF20: 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE 1 PANTHER PTHR10336: PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Mlc2p | Gene3D G3DSA:1.10.238.10: no description SUPERFAMILY SSF47473: EF-hand |
PANTHER PTHR10891:SF45: MYOSIN LIGHT CHAIN\CALMODULIN 9 PANTHER PTHR10891: EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
This table lists domains/motifs that are unique to Cmd1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Cmd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Cmd1p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR23050 | CALCIUM BINDING PROTEIN |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Cmd1p .
