MMS4/YBR098W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Mms4p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Mms4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mms4p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Mms4p
Protein	Motifs in common with Mms4p	Other motifs in this protein (but not in Mms4p )
Mus81p	SMART SM00891: ERCC4 domain	SUPERFAMILY SSF52980: Restriction endonuclease-like Gene3D G3DSA:3.40.50.10130: no description PANTHER PTHR13451: CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 Pfam PF02732: ERCC4
Rad1p	SMART SM00891: ERCC4 domain	TIGRFAMs TIGR00596: rad1: DNA repair protein (rad1) Gene3D G3DSA:3.40.50.10130: no description PANTHER PTHR10150: DNA REPAIR ENDONUCLEASE XPF SUPERFAMILY SSF52980: Restriction endonuclease-like SUPERFAMILY SSF47781: RuvA domain 2-like

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Mms4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mms4p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Mms4p .

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Mms4p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Mms4p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Mms4p .