RER2/YBR002C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rer2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rer2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rer2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rer2p
Protein	Motifs in common with Rer2p	Other motifs in this protein (but not in Rer2p )
Nus1p	Gene3D G3DSA:3.40.1180.10: no description SUPERFAMILY SSF64005: Undecaprenyl diphosphate synthase	PANTHER PTHR21528:SF0: SUBFAMILY NOT NAMED PANTHER PTHR21528: UNCHARACTERIZED
Srt1p	SUPERFAMILY SSF64005: Undecaprenyl diphosphate synthase PANTHER PTHR10291: DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE Gene3D G3DSA:3.40.1180.10: no description TIGRFAMs TIGR00055: uppS: di-trans,poly-cis-decaprenylcistransferase Pfam PF01255: Prenyltransf	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Rer2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rer2p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rer2p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rer2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rer2p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rer2p .