RTG3/YBL103C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rtg3p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Rtg3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rtg3p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Rtg3p
Protein Motifs in common with Rtg3p Other motifs in this protein (but not in Rtg3p )
Ino2p SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
SMART SM00353: helix loop helix domain
none
Pho4p Gene3D G3DSA:4.10.280.10: no description
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
Pfam PF00010: HLH
SMART SM00353: helix loop helix domain
PANTHER PTHR10985:SF40: ADL123CP
PANTHER PTHR10985: BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
Cbf1p SMART SM00353: helix loop helix domain
Gene3D G3DSA:4.10.280.10: no description
Pfam PF00010: HLH
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
PANTHER PTHR12565:SF27: CENTROMERE-BINDING PROTEIN 1
PANTHER PTHR12565: STEROL REGULATORY ELEMENT-BINDING PROTEIN
Rtg1p Pfam PF00010: HLH
SMART SM00353: helix loop helix domain
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
Gene3D G3DSA:4.10.280.10: no description
none
Ino4p SMART SM00353: helix loop helix domain
Gene3D G3DSA:4.10.280.10: no description
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
none
Hms1p SMART SM00353: helix loop helix domain
Pfam PF00010: HLH
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
Gene3D G3DSA:4.10.280.10: no description
PANTHER PTHR12565:SF3: STEROL REGULATORY ELEMENT-BINDING PROTEIN
PANTHER PTHR12565: STEROL REGULATORY ELEMENT-BINDING PROTEIN
Tye7p Pfam PF00010: HLH
Gene3D G3DSA:4.10.280.10: no description
SMART SM00353: helix loop helix domain
SUPERFAMILY SSF47459: HLH, helix-loop-helix DNA-binding domain
PANTHER PTHR12565:SF17: SERINE-RICH PROTEIN TYE7
PANTHER PTHR12565: STEROL REGULATORY ELEMENT-BINDING PROTEIN

Unique domains/motifs


This table lists domains/motifs that are unique to Rtg3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rtg3p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Rtg3p
Database source Accession number Description
PANTHER PTHR10014 BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR
PANTHER PTHR10014:SF6 RETROGRADE REGULATION PROTEIN 3

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rtg3p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rtg3p .


The following external links can be used to directly search external databases for domain/motif information for Rtg3p .