RIB1/YBL033C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rib1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rib1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rib1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rib1p
Protein	Motifs in common with Rib1p	Other motifs in this protein (but not in Rib1p )
Rib3p	PANTHER PTHR21327: GTP CYCLOHYDROLASE II-RELATED	TIGRFAMs TIGR00506: ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthas Pfam PF00926: DHBP_synthase Gene3D G3DSA:3.90.870.10: no description SUPERFAMILY SSF55821: YrdC/RibB PANTHER PTHR21327:SF2: DHBP SYNTHASE, RIB3

Unique domains/motifs

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This table lists domains/motifs that are unique to Rib1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rib1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rib1p
Database source	Accession number	Description
Pfam	PF00925	GTP_cyclohydro2
TIGRFAMs	TIGR00505	ribA: GTP cyclohydrolase II
SUPERFAMILY	SSF142695	RibA-like

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rib1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rib1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rib1p .