POP5/YAL033W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Pop5p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Pop5p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pop5p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Pop5p
Protein	Motifs in common with Pop5p	Other motifs in this protein (but not in Pop5p )
Lip2p	PANTHER PTHR10993: OCTANOYLTRANSFERASE	PANTHER PTHR10993:SF0: OCTANOYLTRANSFERASE Pfam PF03099: BPL_LplA_LipB SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases Gene3D G3DSA:3.90.1550.10: no description ProDom PD006086: LIPB_YEAST_Q06005; TIGRFAMs TIGR00214: lipB: lipoyl(octanoyl) transferase

Unique domains/motifs

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This table lists domains/motifs that are unique to Pop5p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pop5p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Pop5p
Database source	Accession number	Description
PANTHER	PTHR10993:SF1	RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP5
Pfam	PF01900	RNase_P_Rpp14

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Pop5p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Pop5p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Pop5p .