SUR4/YLR372W Summary Help

Standard Name SUR4 (see Nomenclature conflict Note)
Systematic Name YLR372W
Alias ELO3 , SRE1 , VBM1 , APA1
Feature Type ORF, Verified
Description Elongase, involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis (1, 2)
Name Description SUppressor of Rvs161 and rvs167 mutations 3
Chromosomal Location
ChrXII:867354 to 868391 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All SUR4 GO evidence and references
  View Computational GO annotations for SUR4
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
High-throughput
Pathways
Classical genetics
null
overexpression
unspecified
Large-scale survey
null
overexpression
Resources
558 total interaction(s) for 380 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 8
  • Affinity Capture-RNA: 1
  • Affinity Capture-Western: 1
  • Biochemical Activity: 1
  • PCA: 81

Genetic Interactions
  • Dosage Rescue: 1
  • Negative Genetic: 153
  • Phenotypic Enhancement: 7
  • Phenotypic Suppression: 81
  • Positive Genetic: 157
  • Synthetic Growth Defect: 14
  • Synthetic Lethality: 9
  • Synthetic Rescue: 44

Resources
Expression Summary
histogram
Resources
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrXII:867354 to 868391 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..1038 867354..868391 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000004364

NOMENCLATURE CONFLICT NOTE

NameRelevanceDescription
APA1Nomenclature conflictAPA1/YCL050C that encodes a diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I and SUR4/YLR372W that encodes a fatty acid elongase have both been referred to as APA1 in the literature.
References cited on this page View Complete Literature Guide for SUR4
1) Oh CS, et al.  (1997) ELO2 and ELO3, homologues of the Saccharomyces cerevisiae ELO1 gene, function in fatty acid elongation and are required for sphingolipid formation. J Biol Chem 272(28):17376-84
2) Kobayashi SD and Nagiec MM  (2003) Ceramide/long-chain base phosphate rheostat in Saccharomyces cerevisiae: regulation of ceramide synthesis by Elo3p and Cka2p. Eukaryot Cell 2(2):284-94
3) Desfarges L, et al.  (1993) Yeast mutants affected in viability upon starvation have a modified phospholipid composition. Yeast 9(3):267-77