SNR6/snR6 Summary

SNR6/snR6 Summary

Standard Name	SNR6
Systematic Name	snR6
Feature Type	snRNA
Description	U6 spliceosomal RNA (U6 snRNA), interacts with U4; homology to U6 snRNA, interacts with snr14
Name Description	Small Nuclear RNA
Gene Product Alias	U6 , U6 snRNA

Chromosomal Location	ChrXII:366235 to 366346 \| ORF Map \| GBrowse

Gene Ontology Annotations All SNR6 GO evidence and references


Molecular Function
Manually curated	snRNA binding (IPI)
Biological Process
Manually curated	generation of catalytic spliceosome for second transesterification step (IMP) mRNA splicing, via spliceosome (IPI, ISS) spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (IMP)
Cellular Component
Manually curated	U4/U6 x U5 tri-snRNP complex (IDA) U6 snRNP (IDA)

Mutant phenotypes All SNR6 Phenotype evidence and references

Classical genetics
conditional	heat sensitivity: increased

interactions All SNR6 Interaction evidence and references

	14 total interaction(s) for 10 unique genes/features.
Physical Interactions	Affinity Capture-RNA: 3 Protein-RNA: 6 Reconstituted Complex: 1
Genetic Interactions	Dosage Rescue: 1 Synthetic Lethality: 1 Synthetic Rescue: 2

sequence information

ChrXII:366235 to 366346 | |

SGD ORF map

Last Update

Coordinates: 2011-02-03 | Sequence: 2000-05-19

Subfeature details

	Relative Coordinates	Chromosomal Coordinates	Most Recent Updates
	Relative Coordinates	Chromosomal Coordinates	Coordinates	Sequence
Noncoding exon	1..112	366235..366346	2011-02-03	2000-05-19

Retrieve sequences

Analyze Sequence

S288C only	ATCC/WashU Clones \| BLASTN \| Design Primers \| Restriction Fragment Map \| Restriction Fragment Sizes
S288C vs. other species	BLASTN vs. fungi

Resources

External Links	All Associated Seq \| Search all NCBI (Entrez)

Primary SGDID	S000006494