YIR044C Summary

YIR044C Summary

Systematic Name	YIR044C
Feature Type	pseudogene
Description	Possible pseudogene in strain S288C; YIR044C and the adjacent ORF, YIR043C, together may encode a non-functional member of the conserved, often subtelomerically-encoded Cos protein family (1, 2)

Chromosomal Location	ChrIX:438179 to 437994 \| ORF Map \| GBrowse
	Note: this feature is encoded on the Crick strand.

Gene Ontology Annotations All YIR044C GO evidence and references


Molecular Function
Manually curated	molecular_function unknown (ND)
Biological Process
Manually curated	biological_process unknown (ND)
Cellular Component
Manually curated	cellular_component unknown (ND)

Mutant phenotypes All YIR044C Phenotype evidence and references

Large-scale survey
null	competitive fitness: decreased competitive fitness: increased viable
Resources	PROPHECY \| SCMD

interactions All YIR044C Interaction evidence and references

	3 total interaction(s) for 3 unique genes/features.
Physical Interactions	Two-hybrid: 1
Genetic Interactions	Negative Genetic: 1 Synthetic Rescue: 1
Resources	BioGRID \| DIP

Expression Summary


Resources	Genevestigator \| YMGV

Protein Information All YIR044C Protein evidence and references

Localization	YeastGFP
Phosphorylation	PhosphoGRID
Structure	SCOP
Homologs	PDB Homologs

sequence information

ChrIX:438179 to 437994 | |

Note: this feature is encoded on the Crick strand.

SGD ORF map

Last Update

Coordinates: 2011-02-03 | Sequence: 1994-12-10

Subfeature details

	Relative Coordinates	Chromosomal Coordinates	Most Recent Updates
	Relative Coordinates	Chromosomal Coordinates	Coordinates	Sequence
CDS	1..186	438179..437994	2011-02-03	1994-12-10

Retrieve sequences

Analyze Sequence

S288C only	BLASTP \| ATCC/WashU Clones \| BLASTN \| Design Primers \| Restriction Fragment Map \| Restriction Fragment Sizes \| Six-Frame Translation
S288C vs. other species	Fungal Alignment \| BLASTN vs. fungi \| BLASTP vs. fungi \| Synteny Viewer

Resources

External Links	All Associated Seq \| Search all NCBI (Entrez) \| UniProtKB

Primary SGDID	S000001483

References cited on this page View Complete Literature Guide for

1)	Harrison P, et al. (2002) A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J Mol Biol 316(3):409-19
2)	Despons L, et al. (2006) An evolutionary scenario for one of the largest yeast gene families. Trends Genet 22(1):10-5