| Standard Name | TUB4 |
|---|---|
| Systematic Name | YLR212C |
| Feature Type | ORF, Verified |
| Description | Gamma-tubulin; involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body; protein abundance increases in response to DNA replication stress (1, 2, 3, 4 and see Summary Paragraph) |
| Name Description | TUBulin |
| Chromosomal Location | |
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| Note: this feature is encoded on the Crick strand. | |
| View Computational GO annotations for TUB4 | |
| Molecular Function | |
| Manually curated | |
| Biological Process | |
| Manually curated | |
| Cellular Component | |
| Manually curated |
| Classical genetics | |
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| activation | |
| conditional |
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| null | |
| repressible | |
| unspecified | |
| Large-scale survey | |
| conditional | |
| null | |
| reduction of function | |
| repressible | |
| Resources |
| 108 total interaction(s) for 40 unique genes/features. | |
| Physical Interactions |
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| Genetic Interactions |
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| Resources |
| Localization | |
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| Phosphorylation | PhosphoGRID | PhosphoPep Database |
| Structure | |
| Homologs |
| Note: this feature is encoded on the Crick strand. | |||||||||||||
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| Last Update | Coordinates: 2011-02-03 | Sequence: 1996-07-31 | ||||||||||||
| Subfeature details |
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| S288C only | |
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| S288C vs. other species | |
| S288C vs. other strains |
| External Links | All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB |
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| Primary SGDID | S000004202 |
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TUB4 encodes the essential gene for gamma-tubulin (1, 5, 2). Gamma-tubulin is a conserved component of microtubule organizing centers and is essential for microtubule nucleation (for review, 6). Tub4p is a member of the tubulin superfamily, which includes alpha- and beta-tubulin, and the prokaryotic tubulin-like gene FtsZ (reviewed in 7, 8). Compared to other members of the gamma-tubulin family, Tub4p is surprisingly divergent, sharing only 29-38% amino acid sequence identity (1, 5, 2). Tub4p is a component of the S.cerevisiae microtubule organizing center, called the Spindle Pole Body (SPB), which is embedded in the nuclear envelope (1, 5, 2). Tub4p localizes to both nuclear (inner plaque) and cytoplasmic (outer plaque) faces of the SPB and is essential for nucleating microtubules from both faces (1, 5, and reviewed in 9).
Pertubation of Tub4p activity, either by conditional mutations at the non-permissive temperature or by depletion, results in mitotic spindle and SPB defects, including failure to form microtubules (1, 5, 2). The carboxy terminus of Tub4p contains the highly conserved motif DYSLD and an acidic tail; mutational analysis has revealed a role for the carboxy terminus in the nucleation of cytoplasmic microtubules during spindle elongation (10). Tub4p is phosphorylated on several residues in vivo (including the tyrosine moiety in DYSLD) and the phosphorylation state of Tub4p is important for regulating both microtubule number and assembly (11). Phosphorylation of Tub4p is maximal at G1 in the cell cycle (11).
Tub4p forms an evolutionarily conserved 2:1:1 stoichiometric complex with the SPB components Spc97p and Spc98p, in which one molecule of Tub4p binds one molecule of either component (12, 13, 14, 15, 16). In vitro, the Tub4p complex is able to bind pre-formed microtubules but has a low nucleation activity, suggesting that other SPB components may participate in microtubule nucleation (13). The Tub4p complex is targeted to the nuclear face of the SPB via the essential SPB component Spc110p that binds both Spc97p and Spc98p (12). Spc98p may direct the localization of the Tub4p complex to the nuclear face of the SPB via its nuclear localization sequence (17). The essential, outer plaque SPB component Spc72p likely anchors Tub4p complexes to the cytoplasmic side of the SPB, as it interacts with both Spc97p and Spc98p and mutations in SPC72 impair cytoplasmic microtubule formation (18).
| 1) | Marschall LG, et al. (1996) Analysis of Tub4p, a yeast gamma-tubulin-like protein: implications for microtubule-organizing center function. J Cell Biol 134(2):443-54 |
| 2) | Sobel SG and Snyder M (1995) A highly divergent gamma-tubulin gene is essential for cell growth and proper microtubule organization in Saccharomyces cerevisiae. J Cell Biol 131(6 Pt 2):1775-88 |
| 3) | Geissler S, et al. (1996) The spindle pole body component Spc98p interacts with the gamma-tubulin-like Tub4p of Saccharomyces cerevisiae at the sites of microtubule attachment. EMBO J 15(15):3899-911 |
| 4) | Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 |
| 5) | Spang A, et al. (1996) gamma-Tubulin-like Tub4p of Saccharomyces cerevisiae is associated with the spindle pole body substructures that organize microtubules and is required for mitotic spindle formation. J Cell Biol 134(2):429-41 |
| 6) | Moritz M and Agard DA (2001) Gamma-tubulin complexes and microtubule nucleation. Curr Opin Struct Biol 11(2):174-81 |
| 7) | McKean PG, et al. (2001) The extended tubulin superfamily. J Cell Sci 114(Pt 15):2723-33 |
| 8) | Nogales E, et al. (1998) Tubulin and FtsZ form a distinct family of GTPases. Nat Struct Biol 5(6):451-8 |
| 9) | Knop M, et al. (1999) Microtubule organization by the budding yeast spindle pole body. Biol Cell 91(4-5):291-304 |
| 10) | Vogel J and Snyder M (2000) The carboxy terminus of Tub4p is required for gamma-tubulin function in budding yeast. J Cell Sci 113 Pt 21:3871-82 |
| 11) | Vogel J, et al. (2001) Phosphorylation of gamma-tubulin regulates microtubule organization in budding yeast. Dev Cell 1(5):621-31 |
| 12) | Knop M and Schiebel E (1997) Spc98p and Spc97p of the yeast gamma-tubulin complex mediate binding to the spindle pole body via their interaction with Spc110p. EMBO J 16(23):6985-95 |
| 13) | Vinh DB, et al. (2002) Reconstitution and characterization of budding yeast gamma-tubulin complex. Mol Biol Cell 13(4):1144-57 |
| 14) | Martin OC, et al. (1998) Xgrip109: a gamma tubulin-associated protein with an essential role in gamma tubulin ring complex (gammaTuRC) assembly and centrosome function. J Cell Biol 141(3):675-87 |
| 15) | Gunawardane RN, et al. (2000) Characterization and reconstitution of Drosophila gamma-tubulin ring complex subunits. J Cell Biol 151(7):1513-24 |
| 16) | Murphy SM, et al. (1998) The mammalian gamma-tubulin complex contains homologues of the yeast spindle pole body components spc97p and spc98p. J Cell Biol 141(3):663-74 |
| 17) | Pereira G, et al. (1998) Spc98p directs the yeast gamma-tubulin complex into the nucleus and is subject to cell cycle-dependent phosphorylation on the nuclear side of the spindle pole body. Mol Biol Cell 9(4):775-93 |
| 18) | Knop M and Schiebel E (1998) Receptors determine the cellular localization of a gamma-tubulin complex and thereby the site of microtubule formation. EMBO J 17(14):3952-67 |





