TDH2/YJR009C Summary Help

Standard Name TDH2 1
Systematic Name YJR009C
Alias GLD2
Feature Type ORF, Verified
Description Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2; involved in glycolysis and gluconeogenesis; tetramer that catalyzes reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in cytoplasm and cell wall; protein abundance increases in response to DNA replication stress; GAPDH-derived antimicrobial peptides are active against a wide variety of wine-related yeasts and bateria; TDH2 has a paralog, TDH3, that arose from the whole genome duplication (1, 2, 3, 4, 5 and see Summary Paragraph)
Name Description Triose-phosphate DeHydrogenase 1
Gene Product Alias GAPDH 6
Chromosomal Location
ChrX:454681 to 453683 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Genetic position: 2.95 cM
Gene Ontology Annotations All TDH2 GO evidence and references
  View Computational GO annotations for TDH2
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
High-throughput
Regulators 23 genes
Resources
Pathways
Classical genetics
null
Large-scale survey
null
Resources
124 total interaction(s) for 93 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 67
  • Affinity Capture-RNA: 7
  • Affinity Capture-Western: 2
  • Co-fractionation: 1
  • Co-purification: 1
  • PCA: 3
  • Reconstituted Complex: 1
  • Two-hybrid: 4

Genetic Interactions
  • Dosage Rescue: 1
  • Negative Genetic: 27
  • Phenotypic Suppression: 2
  • Synthetic Growth Defect: 1
  • Synthetic Lethality: 6
  • Synthetic Rescue: 1

Resources
Expression Summary
histogram
Resources
Length (a.a.) 332
Molecular Weight (Da) 35,847
Isoelectric Point (pI) 6.96
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrX:454681 to 453683 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
SGD ORF map
Genetic position: 2.95 cM
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..999 454681..453683 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000003769
SUMMARY PARAGRAPH for TDH2

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a tetramer catalyzing the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate. Three unlinked genes, TDH1, TDH2, and TDH3, encode related but not identical polypeptides that form catalytically active homotetramers with different specific activities (1, 2). Interestingly, these catalytically active enzymes are found in the cytoplasm and cell wall. Tdh2p and Tdh3p are detected in exponentially growing cells whereas Tdh1p is primarily detected during stationary phase (6). Therefore, it has been suggested, but not confirmed, that Tdh1p may be involved in a process other than glycolysis because it is synthesized by cells in stationary phase (7).

Glyceraldehyde-3-phosphate dehydrogenase activity is also required during gluconeogenesis, which is the process whereby glucose is synthesized from non-carbohydrate precursors, enabling yeast cells to grow on ethanol, glycerol, or peptone.

The reactions of gluconeogenesis, shown here, mediate conversion of pyruvate to glucose, which is the opposite of glycolysis, the formation of pyruvate from glucose. While these two pathways have several reactions in common, they are not the exact reverse of each other. As the glycolytic enzymes phosphofructokinase (Pfk1p, Pfk2p) and pyruvate kinase (Cdc19p) only function in the forward direction, the gluconeogenesis pathway replaces those steps with the enzymes pyruvate carboxylase (Pyc1p, Pyc2p) and phosphoenolpyruvate carboxykinase (Pck1p) -generating oxaloacetate as an intermediate from pyruvate to phosphoenolpyruvate- and also the enzyme fructose-1,6-bisphosphatase (Fbp1p) (reviewed in 8). Overall, the gluconeogenic reactions convert two molecules of pyruvate to a molecule of glucose, with the expenditure of six high-energy phosphate bonds, four from ATP and two from GTP.

Last updated: 2005-06-17 Contact SGD

References cited on this page View Complete Literature Guide for TDH2
1) McAlister L and Holland MJ  (1985) Isolation and characterization of yeast strains carrying mutations in the glyceraldehyde-3-phosphate dehydrogenase genes. J Biol Chem 260(28):15013-8
2) McAlister L and Holland MJ  (1985) Differential expression of the three yeast glyceraldehyde-3-phosphate dehydrogenase genes. J Biol Chem 260(28):15019-27
3) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
4) Tkach JM, et al.  (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76
5) Branco P, et al.  (2014) Identification of novel GAPDH-derived antimicrobial peptides secreted by Saccharomyces cerevisiae and involved in wine microbial interactions. Appl Microbiol Biotechnol 98(2):843-53
6) Delgado ML, et al.  (2001) The glyceraldehyde-3-phosphate dehydrogenase polypeptides encoded by the Saccharomyces cerevisiae TDH1, TDH2 and TDH3 genes are also cell wall proteins. Microbiology 147(Pt 2):411-7
7) Boucherie H, et al.  (1995) Differential synthesis of glyceraldehyde-3-phosphate dehydrogenase polypeptides in stressed yeast cells. FEMS Microbiol Lett 125(2-3):127-33
8) Klein CJ, et al.  (1998) Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions. Microbiology 144 ( Pt 1)():13-24