SNR7-S/snR7-S Summary

Standard Name	SNR7-S 1 (see Alternative processing Note)
Systematic Name	snR7-S
Alias	SNR7
Feature Type	snRNA
Description	U5 spliceosomal RNA (U5 snRNA), short form; derived from SNR7-L by 3' end processing; associated with spliceosome (2)
Name Description	Small Nuclear RNA
Gene Product Alias	U5 snRNA , U5S 2

Chromosomal Location	ChrVII:939672 to 939494 \| ORF Map \| GBrowse
	Note: this feature is encoded on the Crick strand.


Molecular Function
Manually curated	pre-mRNA 5'-splice site binding (IDA) RNA binding (IDA) contributes_to second spliceosomal transesterification activity (IMP)
Biological Process
Manually curated	alignment of 3' and 5' splice sites of mRNA (IMP) generation of catalytic spliceosome for second transesterification step (IMP) mRNA 5'-splice site recognition (IDA) mRNA splicing, via spliceosome (IMP)
Cellular Component
Manually curated	U4/U6 x U5 tri-snRNP complex (IDA) U5 snRNP (IDA)

	6 total interaction(s) for 5 unique genes/features.
Physical Interactions	Affinity Capture-RNA: 2 Biochemical Activity: 1 Protein-RNA: 2 Reconstituted Complex: 1

sequence information

ChrVII:939672 to 939494 | |

Note: this feature is encoded on the Crick strand.

This feature is contained within: SNR7-L

Last Update

Coordinates: 2011-02-03 | Sequence: 2004-04-01

Subfeature details

	Relative Coordinates	Chromosomal Coordinates	Most Recent Updates
	Relative Coordinates	Chromosomal Coordinates	Coordinates	Sequence
Noncoding exon	1..179	939672..939494	2011-02-03	2004-04-01

Retrieve sequences

Analyze Sequence

S288C only	ATCC/WashU Clones \| BLASTN \| Design Primers \| Restriction Fragment Map \| Restriction Fragment Sizes
S288C vs. other species	BLASTN vs. fungi

Resources

External Links	All Associated Seq \| Search all NCBI (Entrez)

Primary SGDID	S000006496

ALTERNATIVE PROCESSING NOTE

Name	Relevance	Description
SNR7-L	Alternative processing	The 3' end of the SNR7 transcript is subjected to alternative processing that yields two products: SNR7-S [short form] and SNR7-L [long form]).

1)	Riedel N, et al. (1986) Small nuclear RNAs from Saccharomyces cerevisiae: unexpected diversity in abundance, size, and molecular complexity. Proc Natl Acad Sci U S A 83(21):8097-101
2)	Chanfreau G, et al. (1997) Alternative 3'-end processing of U5 snRNA by RNase III. Genes Dev 11(20):2741-51