RRP17/YDR412W Summary Help

Standard Name RRP17 1, 2
Systematic Name YDR412W
Feature Type ORF, Verified
Description Component of the pre-60S pre-ribosomal particle; required for cell viability under standard (aerobic) conditions but not under anaerobic conditions; exonuclease required for 5′ end processing of pre-60S ribosomal RNA (1, 2, 3)
Name Description Ribosomal RNA Processing 1, 2
Chromosomal Location
ChrIV:1294693 to 1295400 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All RRP17 GO evidence and references
  View Computational GO annotations for RRP17
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Classical genetics
repressible
Large-scale survey
null
overexpression
reduction of function
Resources
122 total interaction(s) for 115 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 112
  • Affinity Capture-Western: 1
  • Co-purification: 1
  • PCA: 1
  • Two-hybrid: 5

Genetic Interactions
  • Synthetic Lethality: 2

Resources
Expression Summary
histogram
Resources
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:1294693 to 1295400 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..708 1294693..1295400 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002820
References cited on this page View Complete Literature Guide for RRP17
1) Oeffinger M, et al.  (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6
2) Oeffinger M, et al.  (2009) Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA. Mol Cell 36(5):768-81
3) Snoek IS and Steensma HY  (2006) Why does Kluyveromyces lactis not grow under anaerobic conditions? Comparison of essential anaerobic genes of Saccharomyces cerevisiae with the Kluyveromyces lactis genome. FEMS Yeast Res 6(3):393-403