ROT2/YBR229C Summary Help

Standard Name ROT2
Systematic Name YBR229C
Alias GLS2
Feature Type ORF, Verified
Description Glucosidase II catalytic subunit required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations (1, 2, 3 and see Summary Paragraph)
Name Description Reversal Of Tor2 lethality 1
Chromosomal Location
ChrII:679221 to 676357 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Gene Ontology Annotations All ROT2 GO evidence and references
  View Computational GO annotations for ROT2
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
High-throughput
Classical genetics
null
Large-scale survey
null
Resources
202 total interaction(s) for 104 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 6
  • Affinity Capture-RNA: 3
  • Affinity Capture-Western: 4
  • Co-fractionation: 1
  • PCA: 1
  • Reconstituted Complex: 1

Genetic Interactions
  • Dosage Rescue: 2
  • Negative Genetic: 85
  • Phenotypic Enhancement: 54
  • Phenotypic Suppression: 14
  • Positive Genetic: 3
  • Synthetic Growth Defect: 22
  • Synthetic Lethality: 4
  • Synthetic Rescue: 2

Resources
Expression Summary
histogram
Resources
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrII:679221 to 676357 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1997-01-28
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..2865 679221..676357 2011-02-03 1997-01-28
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000000433
SUMMARY PARAGRAPH for ROT2

During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins (reviewed in 4, 5).

ROT2, also known as GLS2, encodes for the catalytic subunit of glucosidase II, a lumenal enzyme of the ER. After Cwh41p (glucosidase I) removes the most distal glucose from N-linked oligosaccharides (3), Rot2p trims the two remaining glucose moieties previously added by Alg8p and Alg6p. Human (OMIM) and rat glucosidase II each consist of two subunits: a catalytic alpha subunit, which is the homolog of ROT2, and a beta subunit whose putative role is to target the enzyme to the ER (3, 6). GTB1 encodes for the yeast glucosidase II beta subunit (7). (Note: humans have a second, unrelated glucosidase II (OMIM) involved in glycogen metabolism.)

Mutants lacking Rot2p have no detectable growth defect (3) but have reduced levels of beta-1,6-glucan (2) and elevated levels of chitin (1) in the cell walls. In mutants lacking Rot2p, removal of the outermost glucose from N-linked oligosaccharides proceeds at normal rates, and one mannose moiety is removed at greatly reduced rates (8). Also drastically slowed is the degradation of misfolded glycosylated proteins (8).

Last updated: 2005-07-12

References cited on this page View Complete Literature Guide for ROT2
1) Bickle M, et al.  (1998) Cell wall integrity modulates RHO1 activity via the exchange factor ROM2. EMBO J 17(8):2235-45
2) Simons JF, et al.  (1998) Cell wall 1,6-beta-glucan synthesis in Saccharomyces cerevisiae depends on ER glucosidases I and II, and the molecular chaperone BiP/Kar2p. EMBO J 17(2):396-405
3) Trombetta ES, et al.  (1996) Endoplasmic reticulum glucosidase II is composed of a catalytic subunit, conserved from yeast to mammals, and a tightly bound noncatalytic HDEL-containing subunit. J Biol Chem 271(44):27509-16
4) Herscovics A and Orlean P  (1993) Glycoprotein biosynthesis in yeast. FASEB J 7(6):540-50
5) Burda P and Aebi M  (1999) The dolichol pathway of N-linked glycosylation. Biochim Biophys Acta 1426(2):239-57
6) Pelletier MF, et al.  (2000) The heterodimeric structure of glucosidase II is required for its activity, solubility, and localization in vivo. Glycobiology 10(8):815-27
7) Wilkinson BM, et al.  (2006) Yeast GTB1 encodes a subunit of glucosidase II required for glycoprotein processing in the endoplasmic reticulum. J Biol Chem 281(10):6325-33
8) Jakob CA, et al.  (1998) Degradation of misfolded endoplasmic reticulum glycoproteins in Saccharomyces cerevisiae is determined by a specific oligosaccharide structure. J Cell Biol 142(5):1223-33