PYC2/YBR218C Summary Help

Standard Name PYC2
Systematic Name YBR218C
Feature Type ORF, Verified
Description Pyruvate carboxylase isoform; cytoplasmic enzyme that converts pyruvate to oxaloacetate; differentially regulated than isoform Pyc1p; mutations in the human homolog are associated with lactic acidosis; PYC2 has a paralog, PYC1, that arose from the whole genome duplication (1, 2, 3, 4 and see Summary Paragraph)
Name Description PYruvate Carboxylase
Chromosomal Location
ChrII:662249 to 658707 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Gene Ontology Annotations All PYC2 GO evidence and references
  View Computational GO annotations for PYC2
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Regulators 2 genes
Resources
Pathways
Classical genetics
null
Large-scale survey
null
Resources
97 total interaction(s) for 86 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 12
  • Affinity Capture-RNA: 1
  • Co-purification: 1
  • Two-hybrid: 1

Genetic Interactions
  • Dosage Rescue: 3
  • Negative Genetic: 60
  • Phenotypic Enhancement: 3
  • Positive Genetic: 10
  • Synthetic Growth Defect: 2
  • Synthetic Lethality: 4

Resources
Expression Summary
histogram
Resources
Length (a.a.) 1,180
Molecular Weight (Da) 130,166
Isoelectric Point (pI) 6.47
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrII:662249 to 658707 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1997-01-28
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..3543 662249..658707 2011-02-03 1997-01-28
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000000422
SUMMARY PARAGRAPH for PYC2

Gluconeogenesis is the process whereby glucose is synthesized from non-carbohydrate precursors, which enables yeast cells to grow on non-sugar carbon sources like ethanol, glycerol, or peptone. The reactions of gluconeogenesis, shown here, mediate conversion of pyruvate to glucose, which is the opposite of glycolysis, the formation of pyruvate from glucose. While these two pathways have several reactions in common, they are not the exact reverse of each other. As the glycolytic enzymes phosphofructokinase (Pfk1p, Pfk2p) and pyruvate kinase (Cdc19p) only function in the forward direction, the gluconeogenesis pathway replaces those steps with the enzymes pyruvate carboxylase (Pyc1p, Pyc2p) and phosphoenolpyruvate carboxykinase (Pck1p)-generating oxaloacetate as an intermediate from pyruvate to phosphoenolpyruvate-and also the enzyme fructose-1,6-bisphosphatase (Fbp1p) (reviewed in 5). Overall, the gluconeogenic reactions convert two molecules of pyruvate to a molecule of glucose, with the expenditure of six high-energy phosphate bonds, four from ATP and two from GTP. Expression of genes encoding several of the gluconeogenic enzymes is subject to glucose repression (6).

PYC2 encodes one of the two yeast pyruvate carboxylase isozymes; the other is encoded by PYC1 (7, 8, 1). Pyruvate carboxylase produces oxaloacetate from pyruvate, a process which in many organisms is mitochondrial, but in yeast is cytosolic (9, 10). No obvious phenotype is observed when either PYC1 or PYC2 is disrupted singly, but when both genes are disrupted cells are unable to grow with glucose as the sole carbon source unless aspartate is added to the medium instead of ammonia (8). PYC1 and PYC2 are differentially regulated, with expression influenced by growth phase and carbon source (2). Expression of PYC1 but not PYC2 is also regulated by the type of nitrogen source independently of the carbon source in the medium (11). Mutations in PC, the human pyruvate carboxylase gene (OMIM), are associated with pyruvate carboxylase deficiency and ataxia with lactic acidosis (OMIM) (3).

Last updated: 2005-07-22 Contact SGD

References cited on this page View Complete Literature Guide for PYC2
1) Walker ME, et al.  (1991) Yeast pyruvate carboxylase: identification of two genes encoding isoenzymes. Biochem Biophys Res Commun 176(3):1210-7
2) Brewster NK, et al.  (1994) Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth. Arch Biochem Biophys 311(1):62-71
3) Foury F  (1997) Human genetic diseases: a cross-talk between man and yeast. Gene 195(1):1-10
4) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
5) Klein CJ, et al.  (1998) Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions. Microbiology 144 ( Pt 1)():13-24
6) Haarasilta S and Oura E  (1975) On the activity and regulation of anaplerotic and gluconeogenetic enzymes during the growth process of baker's yeast. The biphasic growth. Eur J Biochem 52(1):1-7
7) Morris CP, et al.  (1987) Yeast pyruvate carboxylase: gene isolation. Biochem Biophys Res Commun 145(1):390-6
8) Stucka R, et al.  (1991) DNA sequences in chromosomes II and VII code for pyruvate carboxylase isoenzymes in Saccharomyces cerevisiae: analysis of pyruvate carboxylase-deficient strains. Mol Gen Genet 229(2):307-15
9) Pronk JT, et al.  (1996) Pyruvate metabolism in Saccharomyces cerevisiae. Yeast 12(16):1607-33
10) Haarasilta S and Taskinen L  (1977) Location of three key enzymes of gluconeogenesis in baker's yeast. Arch Microbiol 113(1-2):159-61
11) Huet C, et al.  (2000) Regulation of pyc1 encoding pyruvate carboxylase isozyme I by nitrogen sources in Saccharomyces cerevisiae. Eur J Biochem 267(23):6817-23