HSX1/tR(CCU)J Summary Help

Standard Name HSX1 1
Systematic Name tR(CCU)J
Feature Type tRNA
Description Arginine tRNA (tRNA-Arg), predicted by tRNAscan-SE analysis; low abundance tRNA required for growth on nonfermentable carbon sources at high temperatures, for synthesis of heat shock protein Ssc1p, and for Ty1 retrotransposition through the regulation of translational frameshifting (1, 2, 3)
Chromosomal Location
ChrX:538555 to 538626 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All HSX1 GO evidence and references
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Classical genetics
null
Large-scale survey
null
1 total interaction(s) for 1 unique genes/features.
Genetic Interactions
  • Synthetic Growth Defect: 1

Resources
sequence information
ChrX:538555 to 538626 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 2000-05-19
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
Noncoding exon 1..72 538555..538626 2011-02-03 2000-05-19
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
Resources
External Links All Associated Seq | Search all NCBI (Entrez)
Primary SGDIDS000006707
References cited on this page View Complete Literature Guide for HSX1
1) Kawakami K, et al.  (1992) Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae. Genetics 131(4):821-32
2) Kawakami K, et al.  (1993) A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135(2):309-20
3) Chan PP and Lowe TM  (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7