tR(UCU)J1 Summary Help

Systematic Name tR(UCU)J1
Feature Type tRNA
Description Arginine tRNA (tRNA-Arg), predicted by tRNAscan-SE analysis; one of 11 nuclear tRNA genes containing the tDNA-anticodon UCU (converted to mcm5-UCU in the mature tRNA), decodes AGA codons into arginine, one of 19 nuclear tRNAs for arginine (1, 2, 3, 4, 5)
Chromosomal Location
ChrX:355374 to 355445 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All tR(UCU)J1 GO evidence and references
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
1 total interaction(s) for 1 unique genes/features.
Physical Interactions
  • Protein-RNA: 1

Resources
sequence information
ChrX:355374 to 355445 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 2000-05-19
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
Noncoding exon 1..72 355374..355445 2011-02-03 2000-05-19
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
Resources
External Links All Associated Seq | Search all NCBI (Entrez)
Primary SGDIDS000006714
References cited on this page View Complete Literature Guide for tR(UCU)J1
1) Percudani R, et al.  (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30
2) Hani J and Feldmann H  (1998) tRNA genes and retroelements in the yeast genome. Nucleic Acids Res 26(3):689-96
3) Straby KB  (1988) A yeast tRNA(Arg) gene can act as promoter for a 5' flank deficient, non-transcribable tRNA(SUP)6 gene to produce biologically active suppressor tRNA. Nucleic Acids Res 16(7):2841-57
4) Huang B, et al.  (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94
5) Chan PP and Lowe TM  (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7