| Standard Name | GDB1 |
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| Systematic Name | YPR184W |
| Feature Type | ORF, Verified |
| Description | Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress (1, 2, 3, 4 and see Summary Paragraph) |
| Chromosomal Location | |
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| View Computational GO annotations for GDB1 | |
| Molecular Function | |
| Manually curated | |
| Biological Process | |
| Manually curated | |
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| High-throughput |
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| Classical genetics | |
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| null | |
| Large-scale survey | |
| null |
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| Resources |
| 32 total interaction(s) for 26 unique genes/features. | |
| Physical Interactions |
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| Genetic Interactions |
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| Localization | |
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| Phosphorylation | PhosphoGRID | PhosphoPep Database |
| Structure | |
| Homologs |
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| Last Update | Coordinates: 2011-02-03 | Sequence: 1996-07-31 | ||||||||||||
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| S288C only | |
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| S288C vs. other species | |
| S288C vs. other strains |
| External Links | All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB |
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| Primary SGDID | S000006388 |
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Glycogen is a branched polysaccharide of high molecular mass that is used as a storage carbohydrate. In S. cerevisiae, glycogen is typically catabolized to glucose-1-phosphate and glucose by the Gph1p glycogen phosphorylase and the Gdb1p debranching enzyme (5). However, during sporulation, glycogen is rapidly catabolized to glucose by the Sga1p glucoamylase (5).
The Gdb1p dual-activity glycogen debranching enzyme eliminates branchpoints in glycogen in a two-step process that includes (i) the transfer of a maltotriosyl (or maltosyl) unit from the branchpoint to an adjacent alpha-1,4-glucosyl chain using its oligo-1,4 to 1,4-glucanotransferase activity (EC 2.4.1.25), and (ii) the subsequent hydrolysis of the residual alpha-1,6-linked glucose residue by its alpha-1,6-glucosidase activity (EC 3.2.1.33) (1). Once the branch is resolved, glycogen degradation continues by the action of a second enzyme, the Gph1p glycogen phosphorylase (5).
GDB1 expression is regulated by stress-response elements, and is induced during late exponential growth phase and in response to various stresses, as are other glycogen metabolism genes (1). gdb1 null mutants are viable, but display increased accumulation of glycogen (1). No phenotypes corresponding to the mammalian glycogen storage disease III, associated with mutations in human glycogen debranching enzyme (AGL), have been identified for S. cerevisiae gdb1 null mutants (5).
| 1) | Teste MA, et al. (2000) The Saccharomyces cerevisiae YPR184w gene encodes the glycogen debranching enzyme. FEMS Microbiol Lett 193(1):105-10 |
| 2) | Reinders J, et al. (2007) Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase. Mol Cell Proteomics 6(11):1896-906 |
| 3) | Walkey CJ, et al. (2011) The Saccharomyces cerevisiae fermentation stress response protein Igd1p/Yfr017p regulates glycogen levels by inhibiting the glycogen debranching enzyme. FEMS Yeast Res 11(6):499-508 |
| 4) | Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 |
| 5) | Francois J and Parrou JL (2001) Reserve carbohydrates metabolism in the yeast Saccharomyces cerevisiae. FEMS Microbiol Rev 25(1):125-45 |





