RIM13/YMR154C Summary Help

RIM13 BASIC INFORMATION

Standard Name RIM13 1
Systematic Name YMR154C
Alias CPL1
Feature Type ORF, Verified
Description Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB (2, 3)
Name Description Regulator of IME2 1
GO Annotations All RIM13 GO evidence and references
    View Computational GO annotations for RIM13
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Mutant Phenotype All RIM13 Phenotype details and references
Classical genetics
conditional
null
unspecified
Large-scale survey
null
Interactions RIM13 All interactions details and references
  View additional details at BioGRID
215 total interaction(s) for 150 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 1
  • Affinity Capture-RNA: 2
  • Affinity Capture-Western: 1
  • PCA: 1
  • Two-hybrid: 2
Genetic Interactions
  • Dosage Rescue: 1
  • Negative Genetic: 168
  • Phenotypic Enhancement: 1
  • Phenotypic Suppression: 3
  • Positive Genetic: 15
  • Synthetic Growth Defect: 8
  • Synthetic Lethality: 12
Sequence Information
ChrXIII:568181 to 565998 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Last Update Coordinates: 1996-07-31 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates		 Chromosomal
Coordinates		 Most Recent Updates
Coordinates Sequence
CDS 1..2184 568181..565998 1996-07-31 1996-07-31
Post-translational Modifications PhosphoGRID | PhosphoPep Database
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | UniProtKB
Primary SGDIDS000004763

RIM13 RESOURCES

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SGD ORF mapGBrowse
SGD ORF map
 GBrowse
  • Literature
  • Retrieve Sequences
  • Sequence Analysis Tools
  • Protein Info & Structure
  • Localization Resources
  • Interactions
  • Phenotype Resources
  • Maps & Displays
  • Comparison Resources
  • Functional Analysis

Click on histogram for expression summary
Expression Summary histogram

ADDITIONAL INFORMATION for RIM13

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for RIM13]

1) Su SS and Mitchell AP  (1993) Identification of functionally related genes that stimulate early meiotic gene expression in yeast. Genetics 133(1):67-77
2) Futai E, et al.  (1999) The protease activity of a calpain-like cysteine protease in Saccharomyces cerevisiae is required for alkaline adaptation and sporulation. Mol Gen Genet 260(6):559-68
3) Penalva MA and Arst HN Jr  (2002) Regulation of gene expression by ambient pH in filamentous fungi and yeasts. Microbiol Mol Biol Rev 66(3):426-46, table of contents