| Standard Name | TUB1 |
|---|---|
| Systematic Name | YML085C |
| Feature Type | ORF, Verified |
| Description | Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication (1, 2, 3 and see Summary Paragraph) |
| Name Description | TUBulin |
| Chromosomal Location | |
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| Note: this feature is encoded on the Crick strand. | |
| Genetic position: -62 cM |
| View Computational GO annotations for TUB1 | |
| Molecular Function | |
| Manually curated | |
| Biological Process | |
| Manually curated | |
| Cellular Component | |
| Manually curated | |
| High-throughput |
| Classical genetics | |
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| conditional | |
| overexpression | |
| reduction of function | |
| Large-scale survey | |
| null |
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| overexpression | |
| Resources |
| 170 total interaction(s) for 113 unique genes/features. | |
| Physical Interactions |
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| Localization | |
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| Phosphorylation | PhosphoGRID | PhosphoPep Database |
| Structure | |
| Homologs |
| Note: this feature is encoded on the Crick strand. | |||||||||||||||||||||||
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| Genetic position: -62 cM | |||||||||||||||||||||||
| Last Update | Coordinates: 1996-07-31 | Sequence: 1996-07-31 | ||||||||||||||||||||||
| Subfeature details |
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| S288C only | |
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| S288C vs. other species | |
| S288C vs. other strains |
| External Links | All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB |
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| Primary SGDID | S000004550 |
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In S.cerevisiae, two genes encode alpha-tubulin: TUB1 and TUB3 (4, 1). Tub1p belongs to the tubulin superfamily, which includes beta- and gamma-tubulin and the prokaryotic tubulin-like gene FtsZ (reviewed in 5, 6). Alpha- and beta-tubulin form tubulin heterodimers, which polymerize into microtubules. Microtubules are conserved cytoskeletal elements that function in nuclear processes: chromosome segregation in mitosis and meiosis, spindle orientation, and nuclear migration during mitosis and mating (7; for reviews, see 8, 9). All microtubules in S.cerevisiae emanate from a microtubule organizing center called the spindle pole body (SPB), which is embedded in the nuclear envelope (for review, see 10). Microtubules extend from both faces of the SPB, generating two types of microtubules: nuclear and cytoplasmic microtubules (11; for review, see 10). The distribution and length of these two types of microtubules is regulated throughout the cell cycle (11; reviewed in 12).
TUB1 and TUB3 were cloned based on their strong homology with their counterparts in other eukaryotes (4, 1). TUB1 is essential and more highly expressed than TUB3 (4, 1). TUB1 and TUB3 are functionally equivalent; consequently, TUB3 overexpression can suppress the lethality of a tub1 null mutation (1). However, in vitro experiments suggest functional differences since microtubules purified from cells that contain only Tub1p are more dynamic than those that contain only Tub3p, displaying elevated rates of shrinkage and catastrophe (13). There is an abundance of tub1 conditional mutants resulting from genetic screens for chromosome loss and sensitivity or resistance to anti-microtubule drugs, suppressor analysis, as well as in vitro mutagenesis (14, 15, 16, 17). Almost all conditional tub1 mutants are cold sensitive, presumably reflecting the intrinsic cold sensitivity of the microtubule polymer. Tub1p interacts with numerous proteins involved in the regulation of microtubules, such as microtubule motors, SPB components, kinetochore components, tubulin biogenesis factors, and beta-tubulin (Tub2p) (reviewed in 8, 9).
Tub1p is a GTP-binding protein, though the GTP bound to Tub1p (and Tub3p) is non-hydrolyzable, whereas the GTP bound to Tub2p is hydrolyzed following tubulin dimer addition to the microtubule end (18). The structure of tubulin has been crystallized in the polymerized state; Tub1p (and Tub3p), rather than Tub2p, is believed to interact directly with the SPB (19).
| 1) | Schatz PJ, et al. (1986) Genetically essential and nonessential alpha-tubulin genes specify functionally interchangeable proteins. Mol Cell Biol 6(11):3722-33 |
| 2) | Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61 |
| 3) | Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 |
| 4) | Schatz PJ, et al. (1986) Two functional alpha-tubulin genes of the yeast Saccharomyces cerevisiae encode divergent proteins. Mol Cell Biol 6(11):3711-21 |
| 5) | McKean PG, et al. (2001) The extended tubulin superfamily. J Cell Sci 114(Pt 15):2723-33 |
| 6) | Nogales E, et al. (1998) Tubulin and FtsZ form a distinct family of GTPases. Nat Struct Biol 5(6):451-8 |
| 7) | Jacobs CW, et al. (1988) Functions of microtubules in the Saccharomyces cerevisiae cell cycle. J Cell Biol 107(4):1409-26 |
| 8) | Winsor B and Schiebel E (1997) Review: an overview of the Saccharomyces cerevisiae microtubule and microfilament cytoskeleton. Yeast 13(5):399-434 |
| 9) | Botstein D, et al. (1997) "The yeast cytoskeleton." Pp. 1-90 in The Molecular and Cellular Biology of the Yeast Saccharomyces: Cell Cycle and Cell Biology, edited by Pringle JR, Broach JR and Jones EW. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press |
| 10) | Knop M, et al. (1999) Microtubule organization by the budding yeast spindle pole body. Biol Cell 91(4-5):291-304 |
| 11) | Kilmartin JV and Adams AE (1984) Structural rearrangements of tubulin and actin during the cell cycle of the yeast Saccharomyces. J Cell Biol 98(3):922-33 |
| 12) | Carminati JL and Stearns T (1999) Cytoskeletal dynamics in yeast. Methods Cell Biol 58:87-105 |
| 13) | Bode CJ, et al. (2003) The two alpha-tubulin isotypes in budding yeast have opposing effects on microtubule dynamics in vitro. EMBO Rep 4(1):94-9 |
| 14) | Hoyt MA, et al. (1990) Chromosome instability mutants of Saccharomyces cerevisiae that are defective in microtubule-mediated processes. Mol Cell Biol 10(1):223-34 |
| 15) | Stearns T, et al. (1990) Yeast mutants sensitive to antimicrotubule drugs define three genes that affect microtubule function. Genetics 124(2):251-62 |
| 16) | Schatz PJ, et al. (1988) Isolation and characterization of conditional-lethal mutations in the TUB1 alpha-tubulin gene of the yeast Saccharomyces cerevisiae. Genetics 120(3):681-95 |
| 17) | Richards KL, et al. (2000) Structure-function relationships in yeast tubulins. Mol Biol Cell 11(5):1887-903 |
| 18) | Carlier MF and Pantaloni D (1981) Kinetic analysis of guanosine 5'-triphosphate hydrolysis associated with tubulin polymerization. Biochemistry 20(7):1918-24 |
| 19) | Nogales E, et al. (1999) High-resolution model of the microtubule. Cell 96(1):79-88 |





