SNT2/YGL131C Summary Help

SNT2 BASIC INFORMATION

Standard Name SNT2
Systematic Name YGL131C
Feature Type ORF, Verified
Description DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters (1, 2, 3)
GO Annotations All SNT2 GO evidence and references
    View Computational GO annotations for SNT2
Molecular Function
High-throughput
Biological Process
Manually curated
Cellular Component
High-throughput
Regulatory Role
Binding motifs SNT2 Transcription Factor Binding Sites and References
  • YGGCGCTAYCA
Regulatory modules predicted: stressResponse ( 445 )
Mutant Phenotype All SNT2 Phenotype details and references
Classical genetics
null
Large-scale survey
null
Interactions SNT2 All interactions details and references
9 total interaction(s) for 8 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 5
  • Affinity Capture-RNA: 1
  • Affinity Capture-Western: 2
Genetic Interactions
  • Phenotypic Enhancement: 1
Sequence Information
ChrVII:265864 to 261653 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Last Update Coordinates: 2004-07-20 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates		 Chromosomal
Coordinates		 Most Recent Updates
Coordinates Sequence
CDS 1..4212 265864..261653 2004-07-20 1996-07-31
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | UniProtKB
Primary SGDIDS000003099

SNT2 RESOURCES

Click on map for expanded view
SGD ORF mapGBrowse
SGD ORF map
 GBrowse
  • Literature
  • Retrieve Sequences
  • Sequence Analysis Tools
  • Protein Info & Structure
  • Localization Resources
  • Interactions
  • Phenotype Resources
  • Maps & Displays
  • Comparison Resources
  • Functional Analysis

Click on histogram for expression summary
Expression Summary histogram

ADDITIONAL INFORMATION for SNT2

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for SNT2]

1) Roguev A, et al.  (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32
2) Harbison CT, et al.  (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104
3) Ward LD and Bussemaker HJ  (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71