STP1/YDR463W Summary Help

Standard Name STP1 1
Systematic Name YDR463W
Alias BAP1 , SSY2 2
Feature Type ORF, Verified
Description Transcription factor; undergoes proteolytic processing by SPS (Ssy1p-Ptr3p-Ssy5p)-sensor component Ssy5p in response to extracellular amino acids; activates transcription of amino acid permease genes and may have a role in tRNA processing; STP1 has a paralog, STP2, that arose from the whole genome duplication (3, 4, 5, 6, 7, 8)
Name Description Species-specific tRNA Processing 1
Chromosomal Location
ChrIV:1386816 to 1388375 | ORF Map | GBrowse
Gbrowse
Genetic position: 298 cM
Gene Ontology Annotations All STP1 GO evidence and references
  View Computational GO annotations for STP1
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Regulatory Role
Binding motifs Predicted STP1 Binding Site Locations
Resources
Mutant phenotypes All STP1 Phenotype evidence and references
Classical genetics
null
overexpression
unspecified
Large-scale survey
null
overexpression
Resources
interactions All STP1 Interaction evidence and references
91 total interaction(s) for 82 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 5
  • Affinity Capture-Western: 2
  • Two-hybrid: 1
Genetic Interactions
  • Dosage Rescue: 2
  • Negative Genetic: 55
  • Phenotypic Enhancement: 5
  • Phenotypic Suppression: 1
  • Positive Genetic: 8
  • Synthetic Growth Defect: 9
  • Synthetic Lethality: 3
Resources
Expression Summary
histogram
Resources
Protein Information All STP1 Protein evidence and references
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:1386816 to 1388375 | ORF Map | GBrowse
SGD ORF map
Genetic position: 298 cM
Last Update Coordinates: 2011-02-03 | Sequence: 2003-09-22
Subfeature details
Relative
Coordinates		 Chromosomal
Coordinates		 Most Recent Updates
Coordinates Sequence
CDS 1..1560 1386816..1388375 2011-02-03 2003-09-22
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002871
References cited on this page View Complete Literature Guide for STP1
1) Wang SS and Hopper AK  (1988) Isolation of a yeast gene involved in species-specific pre-tRNA processing. Mol Cell Biol 8(12):5140-9
2) Jorgensen MU, et al.  (1998) Mutations in five loci affecting GAP1-independent uptake of neutral amino acids in yeast. Yeast 14(2):103-14
3) Wang SS, et al.  (1992) STP1, a gene involved in pre-tRNA processing, encodes a nuclear protein containing zinc finger motifs. Mol Cell Biol 12(6):2633-43
4) Jorgensen MU, et al.  (1997) STP1, a gene involved in pre-tRNA processing in yeast, is important for amino-acid uptake and transcription of the permease gene BAP2. Curr Genet 31(3):241-7
5) de Boer M, et al.  (2000) Stp1p, Stp2p and Abf1p are involved in regulation of expression of the amino acid transporter gene BAP3 of Saccharomyces cerevisiae. Nucleic Acids Res 28(4):974-81
6) Andreasson C and Ljungdahl PO  (2002) Receptor-mediated endoproteolytic activation of two transcription factors in yeast. Genes Dev 16(24):3158-72
7) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
8) Andreasson C, et al.  (2006) Regulation of transcription factor latency by receptor-activated proteolysis. Genes Dev 20(12):1563-8
9) Nielsen PS, et al.  (2001) Transcriptional regulation of the Saccharomyces cerevisiae amino acid permease gene BAP2. Mol Gen Genet 264(5):613-22