SNU56/YDR240C Summary Help

Standard Name SNU56 1
Systematic Name YDR240C
Alias MUD10
Feature Type ORF, Verified
Description Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart; interacts with mRNA in commitment complex (1, 2, 3)
Name Description Small NUclear ribonucleoprotein associated 1
Chromosomal Location
ChrIV:945152 to 943674 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
Gbrowse
Gene Ontology Annotations All SNU56 GO evidence and references
  View Computational GO annotations for SNU56
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Regulators 4 genes
Resources
Large-scale survey
null
reduction of function
Resources
108 total interaction(s) for 43 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 83
  • Affinity Capture-Western: 2
  • Co-purification: 1
  • PCA: 1
  • Reconstituted Complex: 1
  • Two-hybrid: 6

Genetic Interactions
  • Dosage Lethality: 1
  • Negative Genetic: 6
  • Positive Genetic: 1
  • Synthetic Growth Defect: 1
  • Synthetic Lethality: 5

Resources
Expression Summary
histogram
Resources
Length (a.a.) 492
Molecular Weight (Da) 56,498
Isoelectric Point (pI) 10.1
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:945152 to 943674 | ORF Map | GBrowse
Note: this feature is encoded on the Crick strand.
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..1479 945152..943674 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002648
References cited on this page View Complete Literature Guide for SNU56
1) Gottschalk A, et al.  (1998) A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins. RNA 4(4):374-93
2) Zhang D and Rosbash M  (1999) Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex. Genes Dev 13(5):581-92
3) Stevens SW, et al.  (2002) Composition and functional characterization of the yeast spliceosomal penta-snRNP. Mol Cell 9(1):31-44