PRP42/YDR235W Summary Help

Standard Name PRP42
Systematic Name YDR235W
Alias MUD16 , SNU65
Feature Type ORF, Verified
Description U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats (1)
Name Description Pre-mRNA Processing
Chromosomal Location
ChrIV:933504 to 935138 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All PRP42 GO evidence and references
  View Computational GO annotations for PRP42
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Regulators 3 genes
Resources
Large-scale survey
conditional
null
reduction of function
Resources
77 total interaction(s) for 34 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 61
  • Co-localization: 1
  • Co-purification: 2

Genetic Interactions
  • Negative Genetic: 9
  • Phenotypic Enhancement: 1
  • Synthetic Growth Defect: 1
  • Synthetic Lethality: 2

Resources
Expression Summary
histogram
Resources
Length (a.a.) 544
Molecular Weight (Da) 65,145
Isoelectric Point (pI) 8.08
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:933504 to 935138 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..1635 933504..935138 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002643
References cited on this page View Complete Literature Guide for PRP42
1) Gottschalk A, et al.  (1998) A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins. RNA 4(4):374-93