SED1/YDR077W Summary Help

Standard Name SED1 1
Systematic Name YDR077W
Feature Type ORF, Verified
Description Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication (2, 3, 4, 5, 6, 7)
Name Description Suppression of Exponential Defect 1
Chromosomal Location
ChrIV:600793 to 601809 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All SED1 GO evidence and references
  View Computational GO annotations for SED1
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Classical genetics
null
Large-scale survey
null
overexpression
Resources
37 total interaction(s) for 31 unique genes/features.
Physical Interactions
  • Affinity Capture-RNA: 5
  • Affinity Capture-Western: 2
  • PCA: 1
  • Two-hybrid: 6

Genetic Interactions
  • Dosage Rescue: 2
  • Negative Genetic: 10
  • Phenotypic Enhancement: 6
  • Synthetic Growth Defect: 2
  • Synthetic Lethality: 2
  • Synthetic Rescue: 1

Resources
Expression Summary
histogram
Resources
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:600793 to 601809 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..1017 600793..601809 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002484
References cited on this page View Complete Literature Guide for SED1
1) Drebot MA, et al.  (1987) A yeast mutant conditionally defective only for reentry into the mitotic cell cycle from stationary phase. Proc Natl Acad Sci U S A 84(22):7948-52
2) Shimoi H, et al.  (1998) Sed1p is a major cell wall protein of Saccharomyces cerevisiae in the stationary phase and is involved in lytic enzyme resistance. J Bacteriol 180(13):3381-7
3) Mannazzu I, et al.  (2002) SED1 gene length and sequence polymorphisms in feral strains of Saccharomyces cerevisiae. Appl Environ Microbiol 68(11):5437-44
4) Oender K, et al.  (2003) Translational regulator RpL10p/Grc5p interacts physically and functionally with Sed1p, a dynamic component of the yeast cell surface. Yeast 20(4):281-94
5) Bowen S and Wheals AE  (2004) Incorporation of Sed1p into the cell wall of Saccharomyces cerevisiae involves KRE6. FEMS Yeast Res 4(7):731-5
6) Phadnis N and Ayres Sia E  (2004) Role of the putative structural protein Sed1p in mitochondrial genome maintenance. J Mol Biol 342(4):1115-29
7) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61