UGA3/YDL170W Summary Help

Standard Name UGA3 1, 2
Systematic Name YDL170W
Feature Type ORF, Verified
Description Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes (such as UGA1, UGA2, UGA4); zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus (3, 4, 5)
Name Description Utilization of GAba 2
Chromosomal Location
ChrIV:156318 to 157904 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All UGA3 GO evidence and references
  View Computational GO annotations for UGA3
Molecular Function
Manually curated
High-throughput
Biological Process
Manually curated
Cellular Component
Manually curated
Regulatory Role
Binding motifs Predicted UGA3 Binding Site Locations
    Regulatory modules predicted: stressResponse (523, 481)
    Resources
    Classical genetics
    null
    Large-scale survey
    null
    overexpression
    Resources
    22 total interaction(s) for 22 unique genes/features.
    Physical Interactions
    • Affinity Capture-MS: 1
    • Affinity Capture-RNA: 2
    • Co-localization: 1

    Genetic Interactions
    • Negative Genetic: 11
    • Phenotypic Suppression: 1
    • Synthetic Growth Defect: 6

    Resources
    Expression Summary
    histogram
    Resources
    Localization
    Phosphorylation PhosphoGRID | PhosphoPep Database
    Structure
    Homologs
    sequence information
    ChrIV:156318 to 157904 | ORF Map | GBrowse
    SGD ORF map
    Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
    Subfeature details
    Relative
    Coordinates
    Chromosomal
    Coordinates
    Most Recent Updates
    Coordinates Sequence
    CDS 1..1587 156318..157904 2011-02-03 1996-07-31
    Retrieve sequences
    Analyze Sequence
    S288C only
    S288C vs. other species
    S288C vs. other strains
    Resources
    External Links All Associated Seq | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
    Primary SGDIDS000002329
    References cited on this page View Complete Literature Guide for UGA3
    1) Andre B  (1990) The UGA3 gene regulating the GABA catabolic pathway in Saccharomyces cerevisiae codes for a putative zinc-finger protein acting on RNA amount. Mol Gen Genet 220(2):269-76
    2) Ramos F, et al.  (1985) Mutations affecting the enzymes involved in the utilization of 4-aminobutyric acid as nitrogen source by the yeast Saccharomyces cerevisiae. Eur J Biochem 149(2):401-4
    3) Talibi D, et al.  (1995) Cis- and trans-acting elements determining induction of the genes of the gamma-aminobutyrate (GABA) utilization pathway in Saccharomyces cerevisiae. Nucleic Acids Res 23(4):550-7
    4) Noel J and Turcotte B  (1998) Zinc cluster proteins Leu3p and Uga3p recognize highly related but distinct DNA targets. J Biol Chem 273(28):17463-8
    5) Idicula AM, et al.  (2002) Binding and activation by the zinc cluster transcription factors of Saccharomyces cerevisiae. Redefining the UASGABA and its interaction with Uga3p. J Biol Chem 277(48):45977-83
    6) Badis G, et al.  (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87