TRM3/YDL112W Summary Help

Standard Name TRM3
Systematic Name YDL112W
Feature Type ORF, Verified
Description 2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs (1)
Name Description Transfer RNA Methyltransferase
Chromosomal Location
ChrIV:258915 to 263225 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All TRM3 GO evidence and references
  View Computational GO annotations for TRM3
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
High-throughput
Regulators 3 genes
Resources
Large-scale survey
null
Resources
67 total interaction(s) for 52 unique genes/features.
Physical Interactions
  • Affinity Capture-MS: 11
  • Affinity Capture-RNA: 2
  • Co-purification: 1
  • Two-hybrid: 1

Genetic Interactions
  • Negative Genetic: 33
  • Positive Genetic: 19

Resources
Expression Summary
histogram
Resources
Length (a.a.) 1,436
Molecular Weight (Da) 165,046
Isoelectric Point (pI) 5.99
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrIV:258915 to 263225 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2004-02-11 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..4311 258915..263225 2004-02-11 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000002270
References cited on this page View Complete Literature Guide for TRM3
1) Cavaille J, et al.  (1999) The yeast Saccharomyces cerevisiae YDL112w ORF encodes the putative 2'-O-ribose methyltransferase catalyzing the formation of Gm18 in tRNAs. RNA 5(1):66-81