JHD1/YER051W Summary Help

Standard Name JHD1 1, 2
Systematic Name YER051W
Feature Type ORF, Verified
Description JmjC domain family histone demethylase specific for H3-K36, similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe (1)
Name Description JmjC domain-containing Histone Demethylase 1
Gene Product Alias JHDM1 1 , KDM2 3
Chromosomal Location
ChrV:254656 to 256134 | ORF Map | GBrowse
Gbrowse
Gene Ontology Annotations All JHD1 GO evidence and references
  View Computational GO annotations for JHD1
Molecular Function
Manually curated
Biological Process
Manually curated
Cellular Component
Manually curated
Regulatory Role
Resources
Large-scale survey
null
Resources
14 total interaction(s) for 9 unique genes/features.
Physical Interactions
  • Affinity Capture-Luminescence: 4
  • Affinity Capture-RNA: 1
  • Affinity Capture-Western: 3

Genetic Interactions
  • Negative Genetic: 4
  • Phenotypic Suppression: 1
  • Synthetic Rescue: 1

Resources
Expression Summary
histogram
Resources
Localization
Phosphorylation PhosphoGRID | PhosphoPep Database
Structure
Homologs
sequence information
ChrV:254656 to 256134 | ORF Map | GBrowse
SGD ORF map
Last Update Coordinates: 2011-02-03 | Sequence: 1996-07-31
Subfeature details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Updates
Coordinates Sequence
CDS 1..1479 254656..256134 2011-02-03 1996-07-31
Retrieve sequences
Analyze Sequence
S288C only
S288C vs. other species
S288C vs. other strains
Resources
External Links All Associated Seq | E.C. | Entrez Gene | Entrez RefSeq Protein | MIPS | Search all NCBI (Entrez) | UniProtKB
Primary SGDIDS000000853
References cited on this page View Complete Literature Guide for JHD1
1) Tsukada YI, et al.  (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439(7078):811-6
2) Shi X, et al.  (2007) Proteome-wide Analysis in Saccharomyces cerevisiae Identifies Several PHD Fingers as Novel Direct and Selective Binding Modules of Histone H3 Methylated at Either Lysine 4 or Lysine 36. J Biol Chem 282(4):2450-5
3) Allis CD, et al.  (2007) New nomenclature for chromatin-modifying enzymes. Cell 131(4):633-6