| YOL082W |
ATG19 |
Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway |
Affinity Capture-Western |
physical interactions |
Hit |
BioGRID |
manually curated |
|
|
|
Suzuki K, et al. (2011) Selective Autophagy Regulates Insertional Mutagenesis by the Ty1 Retrotransposon in Saccharomyces cerevisiae. Dev Cell 21(2):358-65 |
| YNR051C |
BRE5 |
Ubiquitin protease cofactor |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YIL043C |
CBR1 |
Microsomal cytochrome b reductase |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YKL049C |
CSE4 |
Centromere protein that resembles histone H3 |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Ranjitkar P, et al. (2010) An E3 Ubiquitin Ligase Prevents Ectopic Localization of the Centromeric Histone H3 Variant via the Centromere Targeting Domain. Mol Cell 40(3):455-64 |
| YBL032W |
HEK2 |
RNA binding protein involved in asymmetric localization of ASH1 mRNA |
Affinity Capture-RNA |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Hasegawa Y, et al. (2008) Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA 14(11):2333-47 |
| YDR044W |
HEM13 |
Coproporphyrinogen III oxidase |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YLR113W |
HOG1 |
Mitogen-activated protein kinase involved in osmoregulation |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Breitkreutz A, et al. (2010) A global protein kinase and phosphatase interaction network in yeast. Science 328(5981):1043-6 |
| YJR135C |
MCM22 |
Outer kinetochore protein and component of the Ctf3 subcomplex |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YGL035C |
MIG1 |
Transcription factor involved in glucose repression |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YPR164W |
MMS1 |
Subunit of an E3 ubiquitin ligase complex involved in replication rep |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YGL167C |
PMR1 |
High affinity Ca2+/Mn2+ P-type ATPase |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YDL095W |
PMT1 |
Protein O-mannosyltransferase of the ER membrane |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YKR081C |
RPF2 |
Essential protein involved in rRNA maturation and ribosomal assembly |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
interaction detected by iTRAQ |
Sahasranaman A, et al. (2011) Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.LID - 10.1038/emboj.2011.338 [doi] EMBO J () |
| YIL148W |
RPL40A |
Ubiquitin-ribosomal 60S subunit protein L40A fusion protein |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YFR004W |
RPN11 |
Metalloprotease subunit of the 19S regulatory particle of the 26S pro |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
Proteasome interacting proteins (PIPs) were identified using QTAX (quantitative analysis of tandem affinity purified in vivo cross-linked (X) protein complexes) |
Kaake RM, et al. (2010) Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. J Proteome Res 9(4):2016-29 |
| YLR022C |
SDO1 |
Essential protein involved in ribosome maturation |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YPR161C |
SGV1 |
Cyclin (Bur2p)-dependent protein kinase that functions in transcripti |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YDR510W |
SMT3 |
Ubiquitin-like protein of the SUMO family |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Hannich JT, et al. (2005) Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae. J Biol Chem 280(6):4102-10 |
| YJR010C-A |
SPC1 |
Subunit of the signal peptidase complex (SPC) |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YLL039C |
UBI4 |
Ubiquitin |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
Candidate ubiquitin-conjugated proteins listed in supplementary table 1 of the paper |
Peng J, et al. (2003) A proteomics approach to understanding protein ubiquitination. Nat Biotechnol 21(8):921-6 |
| YBR264C |
YPT10 |
Rab family GTP-binding protein that contains the PEST signal sequence |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |
| YML131W |
|
Protein of unknown function |
Affinity Capture-MS |
physical interactions |
Bait |
BioGRID |
high-throughput |
|
|
|
Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 |