S. cerevisiae WU-BLAST2 Search Help





Datasets updated: December 1, 2014

This form allows BLAST searches of S. cerevisiae sequence datasets. To search multiple fungal sequences, go to the Fungal BLAST search form.

Query Comment (optional, will be added to output for your use):

NOTE: If the input sequence is less than 30 letters you should change the default Cutoff Score value to something less than 100 or you can miss matches.

or

Upload Local TEXT File: FASTA, GCG, and RAW sequence formats are okay
WORD Documents do not work unless saved as TEXT.

Type or Paste a Query Sequence : (FASTA or RAW format, or No Comments, Numbers are okay)

Choose the Appropriate BLAST Program:

Choose one or more Sequence Datasets:
Select or unselect multiple datasets by pressing the Control (PC) or Command (Mac) key while clicking. Selecting a category label selects all datasets in that category.


or

Options: For descriptions of BLAST options and parameters, refer to the BLAST documentation at NCBI.

Output format :
Comparison Matrix :
Cutoff Score (S value) :
Word Length (W value) :Default = 11 for BLASTN, 3 for all others
Expect threshold (E threshold) :
Number of best alignments to show :
Filter options : DUST file for BLASTN, SEG filter for all others