Batch Download to be Retired Help



Over the last few months we have incorporated all of the functionality of Batch Download, and much more, into YeastMine, an interface that offers flexible queries and fast retrieval of chromosomal features, sequences, GO annotations, interaction data and phenotype annotations. BATCH DOWNLOAD WILL BE RETIRED 8/31/2011.

As an introduction to YeastMine, Short video tutorials that walk you through some of the basic actions in YeastMine are also available.




Step 1: Your Input
Option 1. Enter Feature/Standard Gene names (separate by return:)


Examples:
Gene Name - PPN1
ORF - YDR452W
SGDID - S000002860

OR

Upload a file of Feature/Standard Gene names
Option 2. Pick a chromosome

Then enter coordinates (optional):
to

If no coordinates are entered all the features in the selected chromosome will be retrieved.

OR

Upload a file of chromosomal regions (coordinates are optional) with the following tab-separated columns:
chr start_coordinate stop_coordinate
For example:
III 1356 20455
IV 11331 18001
VI 9856 100010
Step 2: Choose the type of data that you want to retrieve (You can select multiple types)
Please check the help page for details on the output file format.
  • Sequence data





  • Other data
    • SGD_Feature.tab file format)
    gene_association file format)

    Cytoscape file format)
    Cytoscape file format)