Ontology: Molecular Function (GO:0000944)

Definition: Interacting selectively and non-covalently with ribosomal ribonucleic acid (rRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target rRNA molecule.

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term base pairing with rRNA (3 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	base pairing with rRNA	3
High-throughput	none	none
Computational	none	none

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term base pairing with rRNA or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

base pairing with rRNA      3 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
SNR128/snR128	IGI: Inferred from Genetic Interaction with SGD:RDN18-1, SGD:RDN18-2, IMP: Inferred from Mutant Phenotype Assigned on 2008-06-26	manually curated	Liang WQ and Fournier MJ  (1995) U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing. Genes Dev 9(19):2433-43	SGD
SNR17A/snR17a	IGI: Inferred from Genetic Interaction with SGD:ETS1-1, SGD:ETS1-2, IMP: Inferred from Mutant Phenotype Assigned on 2008-06-25	manually curated	Beltrame M and Tollervey D  (1995) Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J 14(17):4350-6	SGD
SNR17B/snR17b	IGI: Inferred from Genetic Interaction with SGD:ETS1-1, SGD:ETS1-2, IMP: Inferred from Mutant Phenotype Assigned on 2008-06-25	manually curated	Beltrame M and Tollervey D  (1995) Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J 14(17):4350-6	SGD

SGD Home About Blog Site Map Help Terms of Use
© Stanford University, Stanford, CA 94305.