GO term: retrotransposon nucleocapsid 
Ontology: Cellular Component (GO:0000943)
Definition: A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog.
Synonyms: Virus-like particle; VLP
View Ontology:
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(text)
Definition: A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog.
Synonyms: Virus-like particle; VLP
View Ontology:
(graph) | (text)
This table lists the methods used to annotate genes either directly to the term
retrotransposon nucleocapsid (95 genes)
or to its variants containing one or more
qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.
Links to Additional Annotations:
| Annotation Method | GO Term | # Yeast Genes Annotated |
|---|---|---|
| Manually curated (download data) | retrotransposon nucleocapsid | 95 |
| High-throughput | none | none |
| Computational | none | none |
Links to Additional Annotations:
- View
annotations in multiple organisms using
- Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.
Annotation details for genes that have been directly annotated to the term
retrotransposon nucleocapsid or its variants containing one or more
qualifiers (NOT, contributes to, or colocalizes with).
| retrotransposon nucleocapsid 95 genes directly annotated to this term |
||||
|---|---|---|---|---|
| Locus | Evidence | Annotation Method | Reference | Assigned By |
| YAR009C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YAR010C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBL005W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBL005W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBL100W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBL100W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBR012W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YBR012W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YCL019W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YCL020W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YCL074W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YCL075W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR034C-C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR034C-D | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR098C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR098C-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR170W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR210C-C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR210C-D | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR210W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR210W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR261C-C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR261C-D | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR261W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR261W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR316W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR316W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR365W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YDR365W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YER137C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
