Ontology: Biological Process (GO:0006886)

Definition: The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Synonyms: copper-induced intracellular protein transport

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term intracellular protein transport (87 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	intracellular protein transport	21
High-throughput	none	none
Computational (download data)	intracellular protein transport	69

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term intracellular protein transport or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

intracellular protein transport      87 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
APL1/YJR005W	IEA: Inferred from Electronic Annotation with EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APL2/YKL135C	IEA: Inferred from Electronic Annotation with EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APL3/YBL037W	IC: Inferred By Curator from AP-2 adaptor complex Assigned on 2012-10-21	manually curated	Yeung BG, et al.  (1999) Adaptor complex-independent clathrin function in yeast. Mol Biol Cell 10(11):3643-59	SGD
	IEA: Inferred from Electronic Annotation with EBI:IPR008152, EBI:IPR009028, EBI:IPR013038, EBI:IPR015873, EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APL4/YPR029C	IEA: Inferred from Electronic Annotation with EBI:IPR008152, EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APL5/YPL195W	IEA: Inferred from Electronic Annotation with EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APL6/YGR261C	IEA: Inferred from Electronic Annotation with EBI:IPR002553 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APM1/YPL259C	IEA: Inferred from Electronic Annotation with EBI:IPR001392, EBI:IPR008968, EBI:IPR018240 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APM2/YHL019C	IEA: Inferred from Electronic Annotation with EBI:IPR018240, EBI:IPR008968 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APM3/YBR288C	IEA: Inferred from Electronic Annotation with EBI:IPR018240, EBI:IPR008968 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APM4/YOL062C	IC: Inferred By Curator from AP-2 adaptor complex Assigned on 2012-10-21	manually curated	Yeung BG, et al.  (1999) Adaptor complex-independent clathrin function in yeast. Mol Biol Cell 10(11):3643-59	SGD
	IEA: Inferred from Electronic Annotation with EBI:IPR001392, EBI:IPR008968 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APS1/YLR170C	IEA: Inferred from Electronic Annotation with EBI:IPR000804 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APS2/YJR058C	IC: Inferred By Curator from AP-2 adaptor complex Assigned on 2012-10-21	manually curated	Yeung BG, et al.  (1999) Adaptor complex-independent clathrin function in yeast. Mol Biol Cell 10(11):3643-59	SGD
	IEA: Inferred from Electronic Annotation with EBI:IPR000804 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
APS3/YJL024C	IEA: Inferred from Electronic Annotation with EBI:IPR000804 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
ARF3/YOR094W	ISS: Inferred from Sequence or structural Similarity Assigned on 2001-01-18	manually curated	Lee FJ, et al.  (1994) Characterization of a glucose-repressible ADP-ribosylation factor 3 (ARF3) from Saccharomyces cerevisiae. J Biol Chem 269(33):20931-7	SGD
ARL3/YPL051W	IMP: Inferred from Mutant Phenotype Assigned on 2002-05-29	manually curated	Huang CF, et al.  (1999) Characterization of a novel ADP-ribosylation factor-like protein (yARL3) in Saccharomyces cerevisiae. J Biol Chem 274(6):3819-27	SGD
BPH1/YCR032W	IMP: Inferred from Mutant Phenotype Assigned on 2007-11-07	manually curated	Shiflett SL, et al.  (2004) Bph1p, the Saccharomyces cerevisiae homologue of CHS1/beige, functions in cell wall formation and protein sorting. Traffic 5(9):700-10	SGD
BST1/YFL025C	IEA: Inferred from Electronic Annotation with EBI:IPR012908 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
BTN2/YGR142W	IMP: Inferred from Mutant Phenotype, IPI: Inferred from Physical Interaction Assigned on 2003-03-24	manually curated	Chattopadhyay S, et al.  (2003) The yeast model for Batten disease: a role for Btn2p in the trafficking of the Golgi-associated vesicular targeting protein, Yif1p. Biochem Biophys Res Commun 302(3):534-8	SGD
	IMP: Inferred from Mutant Phenotype, IPI: Inferred from Physical Interaction with SGD:SIS1 Assigned on 2012-12-03	manually curated	Malinovska L, et al.  (2012) Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates. Mol Biol Cell 23(16):3041-56	SGD
CDC50/YCR094W	IMP: Inferred from Mutant Phenotype Assigned on 2010-07-06	manually curated	Chen S, et al.  (2006) Roles for the Drs2p-Cdc50p complex in protein transport and phosphatidylserine asymmetry of the yeast plasma membrane. Traffic 7(11):1503-17	SGD
CHC1/YGL206C	IEA: Inferred from Electronic Annotation with EBI:IPR000547, EBI:IPR001473, EBI:IPR015348, EBI:IPR016025 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
CLC1/YGR167W	IEA: Inferred from Electronic Annotation with EBI:IPR000996 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
COG3/YER157W	IEA: Inferred from Electronic Annotation with EBI:IPR007265 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
COP1/YDL145C	IEA: Inferred from Electronic Annotation with EBI:IPR006692, EBI:IPR010714 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
CRM1/YGR218W	IEA: Inferred from Electronic Annotation with EBI:IPR001494 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
CSE1/YGL238W	IEA: Inferred from Electronic Annotation with EBI:IPR013713, EBI:IPR001494 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
CUR1/YPR158W	IMP: Inferred from Mutant Phenotype, IPI: Inferred from Physical Interaction with SGD:SIS1 Assigned on 2012-12-03	manually curated	Malinovska L, et al.  (2012) Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates. Mol Biol Cell 23(16):3041-56	SGD
DNF1/YER166W	IGI: Inferred from Genetic Interaction with SGD:DNF2, SGD:DNF3, SGD:DRS2 Assigned on 2006-10-12	manually curated	Hua Z, et al.  (2002) An essential subfamily of Drs2p-related P-type ATPases is required for protein trafficking between Golgi complex and endosomal/vacuolar system. Mol Biol Cell 13(9):3162-77	SGD
DNF2/YDR093W	IGI: Inferred from Genetic Interaction Assigned on 2002-10-07	manually curated	Hua Z, et al.  (2002) An essential subfamily of Drs2p-related P-type ATPases is required for protein trafficking between Golgi complex and endosomal/vacuolar system. Mol Biol Cell 13(9):3162-77	SGD
DNF3/YMR162C	IGI: Inferred from Genetic Interaction Assigned on 2002-10-07	manually curated	Hua Z, et al.  (2002) An essential subfamily of Drs2p-related P-type ATPases is required for protein trafficking between Golgi complex and endosomal/vacuolar system. Mol Biol Cell 13(9):3162-77	SGD
DRS2/YAL026C	IGI: Inferred from Genetic Interaction with SGD:SNF1 Assigned on 2006-10-12	manually curated	Hua Z, et al.  (2002) An essential subfamily of Drs2p-related P-type ATPases is required for protein trafficking between Golgi complex and endosomal/vacuolar system. Mol Biol Cell 13(9):3162-77	SGD

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