GO term: protein phosphorylation Help



Ontology: Biological Process (GO:0006468)

Definition: The process of introducing a phosphate group on to a protein.

Synonyms: protein amino acid phosphorylation

View Ontology: GO Tree Graph (graph) | Amigo (text)

Annotation Summary


This table lists the methods used to annotate genes either directly to the term protein phosphorylation (133 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method GO Term # Yeast Genes Annotated
Manually curated (download data) protein phosphorylation 99
High-throughput (download data) protein phosphorylation 82
Computational (download data) protein phosphorylation 118

Links to Additional Annotations:
Genes Annotated with this Term
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Annotation details for genes that have been directly annotated to the term protein phosphorylation or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

protein phosphorylation
     133 genes directly annotated to this term
Locus Evidence Annotation Method Reference Assigned By
AKL1/YBR059C IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
ALK1/YGL021W IDA: Inferred from Direct Assay
Assigned on 2006-10-31
manually curated Nespoli A, et al.  (2006) Alk1 and Alk2 are two new cell cycle-regulated haspin-like proteins in budding yeast. Cell Cycle 5(13):1464-71 SGD
ALK2/YBL009W IDA: Inferred from Direct Assay
Assigned on 2006-10-31
manually curated Nespoli A, et al.  (2006) Alk1 and Alk2 are two new cell cycle-regulated haspin-like proteins in budding yeast. Cell Cycle 5(13):1464-71 SGD
ARK1/YNL020C IMP: Inferred from Mutant Phenotype,
ISS: Inferred from Sequence or structural Similarity
Assigned on 2001-01-18
manually curated Cope MJ, et al.  (1999) Novel protein kinases Ark1p and Prk1p associate with and regulate the cortical actin cytoskeleton in budding yeast. J Cell Biol 144(6):1203-18 SGD
IDA: Inferred from Direct Assay
Assigned on 2009-02-23
manually curated Jin M and Cai M  (2008) A Novel Function of Arp2p in Mediating Prk1p-specific Regulation of Actin and Endocytosis in Yeast. Mol Biol Cell 19(1):297-307 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
ATG1/YGL180W IMP: Inferred from Mutant Phenotype
Assigned on 2008-05-13
manually curated Matsuura A, et al.  (1997) Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae. Gene 192(2):245-50 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
BCK1/YJL095W TAS: Traceable Author Statement
Assigned on 2001-01-18
manually curated Costigan C and Snyder M  (1994) SLK1, a yeast homolog of MAP kinase activators, has a RAS/cAMP-independent role in nutrient sensing. Mol Gen Genet 243(3):286-96 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
BUB1/YGR188C IDA: Inferred from Direct Assay
Assigned on 2003-02-13
manually curated Roberts BT, et al.  (1994) The Saccharomyces cerevisiae checkpoint gene BUB1 encodes a novel protein kinase. Mol Cell Biol 14(12):8282-91 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
BUD32/YGR262C IDA: Inferred from Direct Assay
Assigned on 2002-10-10
manually curated Stocchetto S, et al.  (1997) Biochemical evidence that Saccharomyces cerevisiae YGR262c gene, required for normal growth, encodes a novel Ser/Thr-specific protein kinase. FEBS Lett 414(1):171-5 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008266, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CAK1/YFL029C IDA: Inferred from Direct Assay,
IMP: Inferred from Mutant Phenotype
Assigned on 2005-11-02
manually curated Kaldis P, et al.  (1996) The Cdk-activating kinase (CAK) from budding yeast. Cell 86(4):553-64 SGD
IDA: Inferred from Direct Assay,
IMP: Inferred from Mutant Phenotype
Assigned on 2005-11-02
manually curated Thuret JY, et al.  (1996) Civ1 (CAK in vivo), a novel Cdk-activating kinase. Cell 86(4):565-76 SGD
IDA: Inferred from Direct Assay,
IMP: Inferred from Mutant Phenotype
Assigned on 2005-11-02
manually curated Espinoza FH, et al.  (1996) A cyclin-dependent kinase-activating kinase (CAK) in budding yeast unrelated to vertebrate CAK. Science 273(5282):1714-7 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CBK1/YNL161W IDA: Inferred from Direct Assay
Assigned on 2008-09-11
manually curated Mazanka E, et al.  (2008) The NDR/LATS family kinase Cbk1 directly controls transcriptional asymmetry. PLoS Biol 6(8):e203 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000961, EBI:IPR002290, EBI:IPR008271, EBI:IPR017892, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CDC15/YAR019C IDA: Inferred from Direct Assay
Assigned on 2002-09-18
manually curated Mah AS, et al.  (2001) Protein kinase Cdc15 activates the Dbf2-Mob1 kinase complex. Proc Natl Acad Sci U S A 98(13):7325-30 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CDC28/YBR160W IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CDC5/YMR001C IDA: Inferred from Direct Assay,
IMP: Inferred from Mutant Phenotype
Assigned on 2006-12-07
manually curated Kitada K, et al.  (1993) A multicopy suppressor gene of the Saccharomyces cerevisiae G1 cell cycle mutant gene dbf4 encodes a protein kinase and is identified as CDC5. Mol Cell Biol 13(7):4445-57 SGD
IDA: Inferred from Direct Assay,
IMP: Inferred from Mutant Phenotype
Assigned on 2006-12-05
manually curated Darieva Z, et al.  (2006) Polo kinase controls cell-cycle-dependent transcription by targeting a coactivator protein. Nature 444(7118):494-8 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR002290, EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CDC7/YDL017W IMP: Inferred from Mutant Phenotype
Assigned on 2006-12-15
manually curated Hollingsworth RE Jr and Sclafani RA  (1990) DNA metabolism gene CDC7 from yeast encodes a serine (threonine) protein kinase. Proc Natl Acad Sci U S A 87(16):6272-6 SGD
IMP: Inferred from Mutant Phenotype
Assigned on 2006-12-15
manually curated Buck V, et al.  (1991) CDC7 protein kinase activity is required for mitosis and meiosis in Saccharomyces cerevisiae. Mol Gen Genet 227(3):452-7 SGD
IMP: Inferred from Mutant Phenotype
Assigned on 2006-12-15
manually curated Yoon HJ and Campbell JL  (1991) The CDC7 protein of Saccharomyces cerevisiae is a phosphoprotein that contains protein kinase activity. Proc Natl Acad Sci U S A 88(9):3574-8 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CHK1/YBR274W IDA: Inferred from Direct Assay
Assigned on 2007-08-21
manually curated Wang H, et al.  (2001) Pds1 phosphorylation in response to DNA damage is essential for its DNA damage checkpoint function. Genes Dev 15(11):1361-72 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CKA1/YIL035C IMP: Inferred from Mutant Phenotype
Assigned on 2010-06-30
manually curated Berkey CD and Carlson M  (2006) A specific catalytic subunit isoform of protein kinase CK2 is required for phosphorylation of the repressor Nrg1 in Saccharomyces cerevisiae. Curr Genet 50(1):1-10 SGD
IDA: Inferred from Direct Assay
Assigned on 2010-06-30
manually curated Barz T, et al.  (2006) Control of methionine biosynthesis genes by protein kinase CK2-mediated phosphorylation of Cdc34. Cell Mol Life Sci 63(18):2183-90 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CKA2/YOR061W IDA: Inferred from Direct Assay
Assigned on 2010-06-30
manually curated Barz T, et al.  (2006) Control of methionine biosynthesis genes by protein kinase CK2-mediated phosphorylation of Cdc34. Cell Mol Life Sci 63(18):2183-90 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CKB1/YGL019W IMP: Inferred from Mutant Phenotype
Assigned on 2010-06-30
manually curated Berkey CD and Carlson M  (2006) A specific catalytic subunit isoform of protein kinase CK2 is required for phosphorylation of the repressor Nrg1 in Saccharomyces cerevisiae. Curr Genet 50(1):1-10 SGD
IDA: Inferred from Direct Assay
Assigned on 2010-06-30
manually curated Barz T, et al.  (2006) Control of methionine biosynthesis genes by protein kinase CK2-mediated phosphorylation of Cdc34. Cell Mol Life Sci 63(18):2183-90 SGD
CKB2/YOR039W IMP: Inferred from Mutant Phenotype
Assigned on 2010-06-30
manually curated Berkey CD and Carlson M  (2006) A specific catalytic subunit isoform of protein kinase CK2 is required for phosphorylation of the repressor Nrg1 in Saccharomyces cerevisiae. Curr Genet 50(1):1-10 SGD
IDA: Inferred from Direct Assay
Assigned on 2010-06-30
manually curated Barz T, et al.  (2006) Control of methionine biosynthesis genes by protein kinase CK2-mediated phosphorylation of Cdc34. Cell Mol Life Sci 63(18):2183-90 SGD
CLA4/YNL298W IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CMK1/YFR014C IDA: Inferred from Direct Assay
Assigned on 2001-01-18
manually curated Ohya Y, et al.  (1991) Two yeast genes encoding calmodulin-dependent protein kinases. Isolation, sequencing and bacterial expressions of CMK1 and CMK2. J Biol Chem 266(19):12784-94 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CMK2/YOL016C IDA: Inferred from Direct Assay
Assigned on 2001-01-18
manually curated Ohya Y, et al.  (1991) Two yeast genes encoding calmodulin-dependent protein kinases. Isolation, sequencing and bacterial expressions of CMK1 and CMK2. J Biol Chem 266(19):12784-94 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CTK1/YKL139W IMP: Inferred from Mutant Phenotype,
ISS: Inferred from Sequence or structural Similarity
with SGD:CDC28
Assigned on 2007-01-22
manually curated Lee JM and Greenleaf AL  (1991) CTD kinase large subunit is encoded by CTK1, a gene required for normal growth of Saccharomyces cerevisiae. Gene Expr 1(2):149-67 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
CTK2/YJL006C IPI: Inferred from Physical Interaction
with SGD:CTK1
Assigned on 2007-01-22
manually curated Sterner DE, et al.  (1995) The yeast carboxyl-terminal repeat domain kinase CTDK-I is a divergent cyclin-cyclin-dependent kinase complex. Mol Cell Biol 15(10):5716-24 SGD
CTK3/YML112W IPI: Inferred from Physical Interaction
with SGD:CTK1
Assigned on 2006-09-25
manually curated Sterner DE, et al.  (1995) The yeast carboxyl-terminal repeat domain kinase CTDK-I is a divergent cyclin-cyclin-dependent kinase complex. Mol Cell Biol 15(10):5716-24 SGD
DBF2/YGR092W IDA: Inferred from Direct Assay
Assigned on 2003-02-04
manually curated Mah AS, et al.  (2001) Protein kinase Cdc15 activates the Dbf2-Mob1 kinase complex. Proc Natl Acad Sci U S A 98(13):7325-30 SGD
IMP: Inferred from Mutant Phenotype
Assigned on 2008-09-26
manually curated Makrantoni V, et al.  (2007) A novel role for the yeast protein kinase Dbf2p in vacuolar H+-ATPase function and sorbic acid stress tolerance. Microbiology 153(Pt 12):4016-26 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000961, EBI:IPR002290, EBI:IPR008271, EBI:IPR017892, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
DBF20/YPR111W IDA: Inferred from Direct Assay
Assigned on 2002-11-18
manually curated Toyn JH and Johnston LH  (1994) The Dbf2 and Dbf20 protein kinases of budding yeast are activated after the metaphase to anaphase cell cycle transition. EMBO J 13(5):1103-13 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000961, EBI:IPR002290, EBI:IPR008271, EBI:IPR017892, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
DUN1/YDL101C IDA: Inferred from Direct Assay
Assigned on 2002-11-12
manually curated Zhao X and Rothstein R  (2002) The Dun1 checkpoint kinase phosphorylates and regulates the ribonucleotide reductase inhibitor Sml1. Proc Natl Acad Sci U S A 99(6):3746-51 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
ELM1/YKL048C IDA: Inferred from Direct Assay
Assigned on 2007-08-14
manually curated Koehler CM and Myers AM  (1997) Serine-threonine protein kinase activity of Elm1p, a regulator of morphologic differentiation in Saccharomyces cerevisiae. FEBS Lett 408(1):109-14 SGD
IDA: Inferred from Direct Assay,
IGI: Inferred from Genetic Interaction
with SGD:SAK1, SGD:TOS3
Assigned on 2007-08-14
manually curated Hong SP, et al.  (2003) Activation of yeast Snf1 and mammalian AMP-activated protein kinase by upstream kinases. Proc Natl Acad Sci U S A 100(15):8839-43 SGD
IDA: Inferred from Direct Assay
Assigned on 2007-08-14
manually curated Elbing K, et al.  (2006) Purification and characterization of the three Snf1-activating kinases of Saccharomyces cerevisiae. Biochem J 393(Pt 3):797-805 SGD
IDA: Inferred from Direct Assay
Assigned on 2012-05-04
high-throughput Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD
IEA: Inferred from Electronic Annotation
with EBI:IPR008271, EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
ENV7/YPL236C IEA: Inferred from Electronic Annotation
with EBI:IPR000719
Last Updated 2013-03-02
computational DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro