GO term: cytoplasm

Ontology: Cellular Component (GO:0005737)

Definition: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Annotation Summary

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This table lists the methods used to annotate genes either directly to the term cytoplasm (2052 genes) or to its variants containing one or more qualifiers (1 gene). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	cytoplasm	398
Manually curated (download data)	NOT: cytoplasm	1
High-throughput (download data)	cytoplasm	999
Computational (download data)	cytoplasm	1432

Links to Additional Annotations:

View annotations in multiple organisms using
Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Genes Annotated with this Term

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Annotation details for genes that have been directly annotated to the term cytoplasm or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

NOT: cytoplasm | cytoplasm

NOT: cytoplasm 1 gene directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
ESF2/YNR054C	IDA: Inferred from Direct Assay Assigned on 2005-08-15	manually curated	Hoang T, et al. (2005) Esf2p, a U3-associated factor required for small-subunit processome assembly and compaction. Mol Cell Biol 25(13):5523-34	SGD

NOT: cytoplasm | cytoplasm

Results: 1 - 30 of 2052 records
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cytoplasm 2052 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
AAH1/YNL141W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
AAP1/YHR047C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
AAR2/YBL074C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
AAR2/YBL074C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
AAT2/YLR027C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
AAT2/YLR027C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ABP1/YCR088W	IDA: Inferred from Direct Assay Assigned on 2002-05-07	high-throughput	Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19	SGD
ABP1/YCR088W	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ABP140/YOR239W	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ABP140/YOR239W	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ABZ1/YNR033W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ABZ2/YMR289W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACB1/YGR037C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ACC1/YNR016C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACC1/YNR016C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACF2/YLR144C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACF2/YLR144C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACH1/YBL015W	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACH1/YBL015W	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACM1/YPL267W	IDA: Inferred from Direct Assay Assigned on 2008-08-22	manually curated	Enquist-Newman M, et al. (2008) Modulation of the Mitotic Regulatory Network by APC-Dependent Destruction of the Cdh1 Inhibitor Acm1. Mol Cell 30(4):437-46	SGD
ACO1/YLR304C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACO1/YLR304C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACS1/YAL054C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACS1/YAL054C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACS2/YLR153C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ACS2/YLR153C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ACT1/YFL039C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ADD37/YMR184W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADD66/YKL206C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADE1/YAR015W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ADE12/YNL220W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ADE2/YOR128C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ADE3/YGR204W	IDA: Inferred from Direct Assay Assigned on 2002-05-07	high-throughput	Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19	SGD
	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADE4/YMR300C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ADE5,7/YGL234W	IDA: Inferred from Direct Assay Assigned on 2002-05-07	high-throughput	Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19	SGD
	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:IPR004733 Last Updated 2009-10-01	computational	DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms.	UniProtKB
ADE6/YGR061C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADE8/YDR408C	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
ADH1/YOL086C	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
ADH1/YOL086C	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADH2/YMR303C	IDA: Inferred from Direct Assay Assigned on 2002-05-07	high-throughput	Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19	SGD
	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD
	IEA: Inferred from Electronic Annotation with EBI:KW-0963 Last Updated 2009-10-01	computational	GOA curators (2000) Gene Ontology annotation based on Swiss-Prot keyword mapping.	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:SL-0086 Last Updated 2009-10-01	computational	GOA curators and UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping.	UniProtKB
ADH5/YBR145W	IDA: Inferred from Direct Assay Assigned on 2003-10-28	high-throughput	Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91	SGD

Results: 1 - 30 of 2052 records
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Graphical Display

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This diagram shows the local area of the Gene Ontology and the numbers of yeast genes annotated to each term in the diagram. Within the diagram, click on the blue arrow to navigate up the tree and click on a GO term name to go to its GO term page.

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