GO term: U6 snRNP 
Ontology: Cellular Component (GO:0005688)
Definition: A ribonucleoprotein complex that contains small nuclear RNA U6.
Synonyms: snRNP U6
View Ontology:
(graph) | 
(text)
Definition: A ribonucleoprotein complex that contains small nuclear RNA U6.
Synonyms: snRNP U6
View Ontology:
(graph) | (text)
This table lists the methods used to annotate genes either directly to the term
U6 snRNP (9 genes)
or to its variants containing one or more
qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.
Links to Additional Annotations:
| Annotation Method | GO Term | # Yeast Genes Annotated |
|---|---|---|
| Manually curated (download data) | U6 snRNP | 9 |
| High-throughput | none | none |
| Computational | none | none |
Links to Additional Annotations:
- View
annotations in multiple organisms using
- Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.
Annotation details for genes that have been directly annotated to the term
U6 snRNP or its variants containing one or more
qualifiers (NOT, contributes to, or colocalizes with).
| U6 snRNP 9 genes directly annotated to this term |
||||
|---|---|---|---|---|
| Locus | Evidence | Annotation Method | Reference | Assigned By |
| LSM2/YBL026W | IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| LSM3/YLR438C-A | TAS: Traceable Author Statement Assigned on 2002-10-23 |
manually curated | Camasses A, et al. (1998) Interactions within the yeast Sm core complex: from proteins to amino acids. Mol Cell Biol 18(4):1956-66 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD | |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| TAS: Traceable Author Statement Assigned on 2005-02-19 |
manually curated | Vidal VP, et al. (1999) Characterization of U6 snRNA-protein interactions. RNA 5(11):1470-81 |
SGD | |
| LSM4/YER112W | IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| TAS: Traceable Author Statement Assigned on 2005-02-19 |
manually curated | Vidal VP, et al. (1999) Characterization of U6 snRNA-protein interactions. RNA 5(11):1470-81 |
SGD | |
| LSM5/YER146W | IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| TAS: Traceable Author Statement Assigned on 2005-02-19 |
manually curated | Vidal VP, et al. (1999) Characterization of U6 snRNA-protein interactions. RNA 5(11):1470-81 |
SGD | |
| LSM6/YDR378C | IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| TAS: Traceable Author Statement Assigned on 2005-02-19 |
manually curated | Vidal VP, et al. (1999) Characterization of U6 snRNA-protein interactions. RNA 5(11):1470-81 |
SGD | |
| LSM7/YNL147W | IDA: Inferred from Direct Assay Assigned on 2002-07-15 |
manually curated | Bouveret E, et al. (2000) A Sm-like protein complex that participates in mRNA degradation. EMBO J 19(7):1661-71 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD | |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| LSM8/YJR022W | IDA: Inferred from Direct Assay Assigned on 2005-11-29 |
manually curated | Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD | |
| TAS: Traceable Author Statement Assigned on 2005-02-19 |
manually curated | Vidal VP, et al. (1999) Characterization of U6 snRNA-protein interactions. RNA 5(11):1470-81 |
SGD | |
| PRP24/YMR268C | IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD |
| SNR6/snR6 | IDA: Inferred from Direct Assay Assigned on 2005-10-03 |
manually curated | Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 |
SGD |
